Commit Graph

131 Commits

Author SHA1 Message Date
yichuan520030910320
7ad2ec39d6 add response highlight 2025-08-03 20:32:07 -07:00
Andy Lee
3cde4fc7b3 fix: Fix pre-commit issues and update tests
- Fix import sorting and unused imports
- Update type annotations to use built-in types (list, dict) instead of typing.List/Dict
- Fix trailing whitespace and end-of-file issues
- Fix Chinese fullwidth comma to regular comma
- Update test_main_cli.py to test_document_rag.py
- Add backward compatibility test for main_cli_example.py
- Pass all pre-commit hooks (ruff, ruff-format, etc.)
2025-07-29 10:19:05 -07:00
GitHub Actions
08eac5c821 chore: release v0.1.16 2025-07-29 00:15:18 +00:00
Andy Lee
4671ed9b36 Fix macos ABI by using system default clang (#11)
* fix: auto-detect normalized embeddings and use cosine distance

- Add automatic detection for normalized embedding models (OpenAI, Voyage AI, Cohere)
- Automatically set distance_metric='cosine' for normalized embeddings
- Add warnings when using non-optimal distance metrics
- Implement manual L2 normalization in HNSW backend (custom Faiss build lacks normalize_L2)
- Fix DiskANN zmq_port compatibility with lazy loading strategy
- Add documentation for normalized embeddings feature

This fixes the low accuracy issue when using OpenAI text-embedding-3-small model with default MIPS metric.

* style: format

* feat: add OpenAI embeddings support to google_history_reader_leann.py

- Add --embedding-model and --embedding-mode arguments
- Support automatic detection of normalized embeddings
- Works correctly with cosine distance for OpenAI embeddings

* feat: add --use-existing-index option to google_history_reader_leann.py

- Allow using existing index without rebuilding
- Useful for testing pre-built indices

* fix: Improve OpenAI embeddings handling in HNSW backend

* fix: improve macOS C++ compatibility and add CI tests

* refactor: improve test structure and fix main_cli example

- Move pytest configuration from pytest.ini to pyproject.toml
- Remove unnecessary run_tests.py script (use test extras instead)
- Fix main_cli_example.py to properly use command line arguments for LLM config
- Add test_readme_examples.py to test code examples from README
- Refactor tests to use pytest fixtures and parametrization
- Update test documentation to reflect new structure
- Set proper environment variables in CI for test execution

* fix: add --distance-metric support to DiskANN embedding server and remove obsolete macOS ABI test markers

- Add --distance-metric parameter to diskann_embedding_server.py for consistency with other backends
- Remove pytest.skip and pytest.xfail markers for macOS C++ ABI issues as they have been fixed
- Fix test assertions to handle SearchResult objects correctly
- All tests now pass on macOS with the C++ ABI compatibility fixes

* chore: update lock file with test dependencies

* docs: remove obsolete C++ ABI compatibility warnings

- Remove outdated macOS C++ compatibility warnings from README
- Simplify CI workflow by removing macOS-specific failure handling
- All tests now pass consistently on macOS after ABI fixes

* fix: update macOS deployment target for DiskANN to 13.3

- DiskANN uses sgesdd_ LAPACK function which is only available on macOS 13.3+
- Update MACOSX_DEPLOYMENT_TARGET from 11.0 to 13.3 for DiskANN builds
- This fixes the compilation error on GitHub Actions macOS runners

* fix: align Python version requirements to 3.9

- Update root project to support Python 3.9, matching subpackages
- Restore macOS Python 3.9 support in CI
- This fixes the CI failure for Python 3.9 environments

* fix: handle MPS memory issues in CI tests

- Use smaller MiniLM-L6-v2 model (384 dimensions) for README tests in CI
- Skip other memory-intensive tests in CI environment
- Add minimal CI tests that don't require model loading
- Set CI environment variable and disable MPS fallback
- Ensure README examples always run correctly in CI

* fix: remove Python 3.10+ dependencies for compatibility

- Comment out llama-index-readers-docling and llama-index-node-parser-docling
- These packages require Python >= 3.10 and were causing CI failures on Python 3.9
- Regenerate uv.lock file to resolve dependency conflicts

* fix: use virtual environment in CI instead of system packages

- uv-managed Python environments don't allow --system installs
- Create and activate virtual environment before installing packages
- Update all CI steps to use the virtual environment

* add some env in ci

* fix: use --find-links to install platform-specific wheels

- Let uv automatically select the correct wheel for the current platform
- Fixes error when trying to install macOS wheels on Linux
- Simplifies the installation logic

* fix: disable OpenMP parallelism in CI to avoid libomp crashes

- Set OMP_NUM_THREADS=1 to avoid OpenMP thread synchronization issues
- Set MKL_NUM_THREADS=1 for single-threaded MKL operations
- This prevents segfaults in LayerNorm on macOS CI runners
- Addresses the libomp compatibility issues with PyTorch on Apple Silicon

* skip several macos test because strange issue on ci

---------

Co-authored-by: yichuan520030910320 <yichuan_wang@berkeley.edu>
2025-07-28 17:14:42 -07:00
Andy Lee
d505dcc5e3 Fix/OpenAI embeddings cosine distance (#10)
* fix: auto-detect normalized embeddings and use cosine distance

- Add automatic detection for normalized embedding models (OpenAI, Voyage AI, Cohere)
- Automatically set distance_metric='cosine' for normalized embeddings
- Add warnings when using non-optimal distance metrics
- Implement manual L2 normalization in HNSW backend (custom Faiss build lacks normalize_L2)
- Fix DiskANN zmq_port compatibility with lazy loading strategy
- Add documentation for normalized embeddings feature

This fixes the low accuracy issue when using OpenAI text-embedding-3-small model with default MIPS metric.

* style: format

* feat: add OpenAI embeddings support to google_history_reader_leann.py

- Add --embedding-model and --embedding-mode arguments
- Support automatic detection of normalized embeddings
- Works correctly with cosine distance for OpenAI embeddings

* feat: add --use-existing-index option to google_history_reader_leann.py

- Allow using existing index without rebuilding
- Useful for testing pre-built indices

* fix: Improve OpenAI embeddings handling in HNSW backend
2025-07-28 14:35:49 -07:00
GitHub Actions
b2eba23e21 chore: release v0.1.15 2025-07-28 05:05:30 +00:00
Andy Lee
5c8921673a fix: auto-detect normalized embeddings and use cosine distance (#8)
* fix: auto-detect normalized embeddings and use cosine distance

- Add automatic detection for normalized embedding models (OpenAI, Voyage AI, Cohere)
- Automatically set distance_metric='cosine' for normalized embeddings
- Add warnings when using non-optimal distance metrics
- Implement manual L2 normalization in HNSW backend (custom Faiss build lacks normalize_L2)
- Fix DiskANN zmq_port compatibility with lazy loading strategy
- Add documentation for normalized embeddings feature

This fixes the low accuracy issue when using OpenAI text-embedding-3-small model with default MIPS metric.

* style: format
2025-07-27 21:19:29 -07:00
yichuan520030910320
455f93fb7c fix emaple and add pypi example 2025-07-27 18:20:13 -07:00
yichuan520030910320
af1790395a fix ruff errors and formatting 2025-07-27 02:22:54 -07:00
GitHub Actions
5d09586853 chore: release v0.1.14 2025-07-27 08:50:56 +00:00
Andy Lee
a7cba078dd chore: consolidate essential fixes and add pre-commit hooks
- Add pre-commit configuration with ruff and black
- Fix lint CI job to use uv tool install instead of sync
- Add essential LlamaIndex dependencies to leann-core

Co-Authored-By: Yichuan Wang <73766326+yichuan-w@users.noreply.github.com>
2025-07-27 01:24:24 -07:00
Andy Lee
b3e9ee96fa fix: resolve all ruff linting errors and add lint CI check
- Fix ambiguous fullwidth characters (commas, parentheses) in strings and comments
- Replace Chinese comments with English equivalents
- Fix unused imports with proper noqa annotations for intentional imports
- Fix bare except clauses with specific exception types
- Fix redefined variables and undefined names
- Add ruff noqa annotations for generated protobuf files
- Add lint and format check to GitHub Actions CI pipeline
2025-07-26 22:38:13 -07:00
GitHub Actions
8375f601ba chore: release v0.1.13 2025-07-27 01:08:17 +00:00
yichuan520030910320
c87c0fe662 update colab install & fix colab path 2025-07-26 18:07:31 -07:00
GitHub Actions
802020cb41 chore: release v0.1.12 2025-07-26 23:35:28 +00:00
yichuan520030910320
cdb92f7cf4 update pytoml version && fix colab env && fix pdf extract in pip 2025-07-26 16:33:13 -07:00
yichuan520030910320
dc69bdec00 Merge branch 'main' of https://github.com/yichuan-w/LEANN 2025-07-25 17:54:43 -07:00
yichuan520030910320
98073e9868 update missing pkg 2025-07-25 17:54:21 -07:00
GitHub Actions
cf2ef48967 chore: release v0.1.11 2025-07-26 00:12:37 +00:00
yichuan520030910320
0692bbf7a2 change workflow 2025-07-25 17:11:56 -07:00
GitHub Actions
52584a171f chore: release v0.1.10 2025-07-25 23:12:16 +00:00
Andy Lee
efd6b5324b fix: add protobuf as a dependency for DiskANN backend
- Fixes 'No module named google' error when starting DiskANN embedding server
- Prevents users from having to manually install protobuf
2025-07-25 16:10:25 -07:00
Andy Lee
2baaa4549b fix: handle relative paths in HNSW embedding server metadata
- Convert relative paths to absolute paths based on metadata file location
- Fixes FileNotFoundError when starting embedding server
- Resolves issue with passages file not found in different working directories
2025-07-25 16:09:53 -07:00
GitHub Actions
75ddcd6158 chore: release v0.1.9 2025-07-25 20:04:42 +00:00
Andy Lee
2a4df11f5c fix: absolute path for passages 2025-07-25 11:59:30 -07:00
yichuan520030910320
cd8b970eff Merge branch 'main' of https://github.com/yichuan-w/LEANN 2025-07-25 01:45:57 -07:00
yichuan520030910320
52153bbb69 update faiss compare 2025-07-25 01:45:50 -07:00
GitHub Actions
e1ae087207 chore: release v0.1.8 2025-07-25 08:24:40 +00:00
Andy Lee
48c5e12ac1 fix: use absolute path for passages_file to prevent FileNotFoundError
When embedding server is launched as a subprocess, it may run in a different
working directory. Using absolute paths ensures the server can always find
the metadata file regardless of where it's launched from.
2025-07-25 01:23:47 -07:00
Andy Lee
673fd9b7cd fix: upgrade to actions v4 and handle manylinux2014 compatibility
- Upgrade all GitHub Actions to v4 (v3 is deprecated)
- Use manual git checkout in manylinux2014 containers to avoid Node.js issues
- Update artifact naming to ensure uniqueness (required by v4)
- Add fail-fast: false to build strategies
- This maintains manylinux2014 compatibility while using latest actions
2025-07-25 00:20:21 -07:00
yichuan520030910320
800d4cf111 Merge branch 'main' of https://github.com/yichuan-w/LEANN 2025-07-25 00:12:47 -07:00
yichuan520030910320
b6d43f5fd9 add gif 2025-07-25 00:12:35 -07:00
GitHub Actions
e64b599276 chore: release v0.1.7 2025-07-25 04:47:57 +00:00
GitHub Actions
166986d5e6 chore: release v0.1.6 2025-07-25 04:30:07 +00:00
GitHub Actions
ed27a127d5 chore: release v0.1.5 2025-07-25 04:00:54 +00:00
GitHub Actions
9000a7083d chore: release v0.1.4 2025-07-25 02:23:36 +00:00
GitHub Actions
20f2aece08 chore: release v0.1.3 2025-07-25 02:05:11 +00:00
GitHub Actions
cea1f6f87c chore: release v0.1.2 2025-07-25 01:53:29 +00:00
Andy Lee
133e715832 fix: resolve CI issues and consolidate workflows
- Fix version dependencies: update backend packages to depend on leann-core==0.1.1
- Remove duplicate ci.yml workflow (keeping build-and-publish.yml as main CI)
- Update release-manual.yml to reference correct CI workflow name

This fixes the dependency resolution error and eliminates duplicate builds.
2025-07-24 17:20:58 -07:00
GitHub Actions
faf5ae3533 chore: release v0.1.1 2025-07-24 23:36:23 +00:00
Andy Lee
a44dccecac fix: make TestPyPI upload optional and non-blocking
- Add continue-on-error to TestPyPI step
- Check if TEST_PYPI_API_TOKEN exists before attempting upload
- Add graceful failure handling with clear messages
- Update docs to explain TestPyPI token configuration
- Clarify that TestPyPI testing is optional

Now the release won't fail if TestPyPI is not configured or upload fails
2025-07-24 16:02:07 -07:00
yichuan520030910320
de252fef31 [chat] update 30s example 2025-07-24 14:40:33 -07:00
Andy Lee
7add391b2c chore: build and package 2025-07-24 00:47:46 -07:00
yichuan520030910320
efd6373b32 [chat] update huggingface chat and make qwen no thinking 2025-07-24 00:11:42 -07:00
yichuan520030910320
88eca75917 fix readme 2025-07-23 18:22:10 -07:00
yichuan520030910320
42de27e16a Merge branch 'main' of https://github.com/yichuan-w/LEANN 2025-07-23 18:17:19 -07:00
yichuan520030910320
c083bda5b7 fix several bug 2025-07-23 18:17:11 -07:00
Andy Lee
e86da38726 fix: ollama hint for similar models 2025-07-23 15:45:10 -07:00
yichuan520030910320
851f0f04c3 fix some para 2025-07-23 01:46:34 -07:00
yichuan520030910320
5dd74982ba fix readme 2025-07-22 23:14:31 -07:00