Files
LEANN/benchmarks/compare_faiss_vs_leann.py
Andy Lee 8899734952 refactor: Unify examples interface with BaseRAGExample (#12)
* refactor: Unify examples interface with BaseRAGExample

- Create BaseRAGExample base class for all RAG examples
- Refactor 4 examples to use unified interface:
  - document_rag.py (replaces main_cli_example.py)
  - email_rag.py (replaces mail_reader_leann.py)
  - browser_rag.py (replaces google_history_reader_leann.py)
  - wechat_rag.py (replaces wechat_history_reader_leann.py)
- Maintain 100% parameter compatibility with original files
- Add interactive mode support for all examples
- Unify parameter names (--max-items replaces --max-emails/--max-entries)
- Update README.md with new examples usage
- Add PARAMETER_CONSISTENCY.md documenting all parameter mappings
- Keep main_cli_example.py for backward compatibility with migration notice

All default values, LeannBuilder parameters, and chunking settings
remain identical to ensure full compatibility with existing indexes.

* fix: Update CI tests for new unified examples interface

- Rename test_main_cli.py to test_document_rag.py
- Update all references from main_cli_example.py to document_rag.py
- Update tests/README.md documentation

The tests now properly test the new unified interface while maintaining
the same test coverage and functionality.

* fix: Fix pre-commit issues and update tests

- Fix import sorting and unused imports
- Update type annotations to use built-in types (list, dict) instead of typing.List/Dict
- Fix trailing whitespace and end-of-file issues
- Fix Chinese fullwidth comma to regular comma
- Update test_main_cli.py to test_document_rag.py
- Add backward compatibility test for main_cli_example.py
- Pass all pre-commit hooks (ruff, ruff-format, etc.)

* refactor: Remove old example scripts and migration references

- Delete old example scripts (mail_reader_leann.py, google_history_reader_leann.py, etc.)
- Remove migration hints and backward compatibility
- Update tests to use new unified examples directly
- Clean up all references to old script names
- Users now only see the new unified interface

* fix: Restore embedding-mode parameter to all examples

- All examples now have --embedding-mode parameter (unified interface benefit)
- Default is 'sentence-transformers' (consistent with original behavior)
- Users can now use OpenAI or MLX embeddings with any data source
- Maintains functional equivalence with original scripts

* docs: Improve parameter categorization in README

- Clearly separate core (shared) vs specific parameters
- Move LLM and embedding examples to 'Example Commands' section
- Add descriptive comments for all specific parameters
- Keep only truly data-source-specific parameters in specific sections

* docs: Make example commands more representative

- Add default values to parameter descriptions
- Replace generic examples with real-world use cases
- Focus on data-source-specific features in examples
- Remove redundant demonstrations of common parameters

* docs: Reorganize parameter documentation structure

- Move common parameters to a dedicated section before all examples
- Rename sections to 'X-Specific Arguments' for clarity
- Remove duplicate common parameters from individual examples
- Better information architecture for users

* docs: polish applications

* docs: Add CLI installation instructions

- Add two installation options: venv and global uv tool
- Clearly explain when to use each option
- Make CLI more accessible for daily use

* docs: Clarify CLI global installation process

- Explain the transition from venv to global installation
- Add upgrade command for global installation
- Make it clear that global install allows usage without venv activation

* docs: Add collapsible section for CLI installation

- Wrap CLI installation instructions in details/summary tags
- Keep consistent with other collapsible sections in README
- Improve document readability and navigation

* style: format

* docs: Fix collapsible sections

- Make Common Parameters collapsible (as it's lengthy reference material)
- Keep CLI Installation visible (important for users to see immediately)
- Better information hierarchy

* docs: Add introduction for Common Parameters section

- Add 'Flexible Configuration' heading with descriptive sentence
- Create parallel structure with 'Generation Model Setup' section
- Improve document flow and readability

* docs: nit

* fix: Fix issues in unified examples

- Add smart path detection for data directory
- Fix add_texts -> add_text method call
- Handle both running from project root and examples directory

* fix: Fix async/await and add_text issues in unified examples

- Remove incorrect await from chat.ask() calls (not async)
- Fix add_texts -> add_text method calls
- Verify search-complexity correctly maps to efSearch parameter
- All examples now run successfully

* feat: Address review comments

- Add complexity parameter to LeannChat initialization (default: search_complexity)
- Fix chunk-size default in README documentation (256, not 2048)
- Add more index building parameters as CLI arguments:
  - --backend-name (hnsw/diskann)
  - --graph-degree (default: 32)
  - --build-complexity (default: 64)
  - --no-compact (disable compact storage)
  - --no-recompute (disable embedding recomputation)
- Update README to document all new parameters

* feat: Add chunk-size parameters and improve file type filtering

- Add --chunk-size and --chunk-overlap parameters to all RAG examples
- Preserve original default values for each data source:
  - Document: 256/128 (optimized for general documents)
  - Email: 256/25 (smaller overlap for email threads)
  - Browser: 256/128 (standard for web content)
  - WeChat: 192/64 (smaller chunks for chat messages)
- Make --file-types optional filter instead of restriction in document_rag
- Update README to clarify interactive mode and parameter usage
- Fix LLM default model documentation (gpt-4o, not gpt-4o-mini)

* feat: Update documentation based on review feedback

- Add MLX embedding example to README
- Clarify examples/data content description (two papers, Pride and Prejudice, Chinese README)
- Move chunk parameters to common parameters section
- Remove duplicate chunk parameters from document-specific section

* docs: Emphasize diverse data sources in examples/data description

* fix: update default embedding models for better performance

- Change WeChat, Browser, and Email RAG examples to use all-MiniLM-L6-v2
- Previous Qwen/Qwen3-Embedding-0.6B was too slow for these use cases
- all-MiniLM-L6-v2 is a fast 384-dim model, ideal for large-scale personal data

* add response highlight

* change rebuild logic

* fix some example

* feat: check if k is larger than #docs

* fix: WeChat history reader bugs and refactor wechat_rag to use unified architecture

* fix email wrong -1 to process all file

* refactor: reorgnize all examples/ and test/

* refactor: reorganize examples and add link checker

* fix: add init.py

* fix: handle certificate errors in link checker

* fix wechat

* merge

* docs: update README to use proper module imports for apps

- Change from 'python apps/xxx.py' to 'python -m apps.xxx'
- More professional and pythonic module calling
- Ensures proper module resolution and imports
- Better separation between apps/ (production tools) and examples/ (demos)

---------

Co-authored-by: yichuan520030910320 <yichuan_wang@berkeley.edu>
2025-08-03 23:06:24 -07:00

327 lines
10 KiB
Python

#!/usr/bin/env python3
"""
Memory comparison between Faiss HNSW and LEANN HNSW backend
"""
import gc
import logging
import os
import subprocess
import sys
import time
from pathlib import Path
import psutil
from llama_index.core.node_parser import SentenceSplitter
# Setup logging
logging.basicConfig(stream=sys.stdout, level=logging.INFO)
logger = logging.getLogger(__name__)
def get_memory_usage():
"""Get current memory usage in MB"""
process = psutil.Process()
return process.memory_info().rss / 1024 / 1024
def print_memory_stats(stage: str, start_mem: float):
"""Print memory statistics"""
current_mem = get_memory_usage()
diff = current_mem - start_mem
print(f"[{stage}] Memory: {current_mem:.1f} MB (+{diff:.1f} MB)")
return current_mem
class MemoryTracker:
def __init__(self, name: str):
self.name = name
self.start_mem = get_memory_usage()
self.stages = []
def checkpoint(self, stage: str):
current_mem = print_memory_stats(f"{self.name} - {stage}", self.start_mem)
self.stages.append((stage, current_mem))
return current_mem
def summary(self):
print(f"\n=== {self.name} Memory Summary ===")
for stage, mem in self.stages:
print(f"{stage}: {mem:.1f} MB")
peak_mem = max(mem for _, mem in self.stages)
print(f"Peak Memory: {peak_mem:.1f} MB")
print(f"Total Memory Increase: {peak_mem - self.start_mem:.1f} MB")
return peak_mem
def test_faiss_hnsw():
"""Test Faiss HNSW Vector Store in subprocess"""
print("\n" + "=" * 50)
print("TESTING FAISS HNSW VECTOR STORE")
print("=" * 50)
try:
result = subprocess.run(
[sys.executable, "benchmarks/faiss_only.py"],
capture_output=True,
text=True,
timeout=300,
)
print(result.stdout)
if result.stderr:
print("Stderr:", result.stderr)
if result.returncode != 0:
return {
"peak_memory": float("inf"),
"error": f"Process failed with code {result.returncode}",
}
# Parse peak memory from output
lines = result.stdout.split("\n")
peak_memory = 0.0
for line in lines:
if "Peak Memory:" in line:
peak_memory = float(line.split("Peak Memory:")[1].split("MB")[0].strip())
return {"peak_memory": peak_memory}
except Exception as e:
return {
"peak_memory": float("inf"),
"error": str(e),
}
def test_leann_hnsw():
"""Test LEANN HNSW Search Memory (load existing index)"""
print("\n" + "=" * 50)
print("TESTING LEANN HNSW SEARCH MEMORY")
print("=" * 50)
tracker = MemoryTracker("LEANN HNSW Search")
# Import and setup
tracker.checkpoint("Initial")
from leann.api import LeannSearcher
tracker.checkpoint("After imports")
from leann.api import LeannBuilder
from llama_index.core import SimpleDirectoryReader
# Load and parse documents
documents = SimpleDirectoryReader(
"data",
recursive=True,
encoding="utf-8",
required_exts=[".pdf", ".txt", ".md"],
).load_data()
tracker.checkpoint("After document loading")
# Parse into chunks
node_parser = SentenceSplitter(
chunk_size=256, chunk_overlap=20, separator=" ", paragraph_separator="\n\n"
)
all_texts = []
for doc in documents:
nodes = node_parser.get_nodes_from_documents([doc])
for node in nodes:
all_texts.append(node.get_content())
print(f"Total number of chunks: {len(all_texts)}")
tracker.checkpoint("After text chunking")
# Build LEANN index
INDEX_DIR = Path("./test_leann_comparison")
INDEX_PATH = str(INDEX_DIR / "comparison.leann")
# Check if index already exists
if os.path.exists(INDEX_PATH + ".meta.json"):
print("Loading existing LEANN HNSW index...")
tracker.checkpoint("After loading existing index")
else:
print("Building new LEANN HNSW index...")
# Clean up previous index
import shutil
if INDEX_DIR.exists():
shutil.rmtree(INDEX_DIR)
builder = LeannBuilder(
backend_name="hnsw",
embedding_model="facebook/contriever",
graph_degree=32,
complexity=64,
is_compact=True,
is_recompute=True,
num_threads=1,
)
tracker.checkpoint("After builder setup")
print("Building LEANN HNSW index...")
for chunk_text in all_texts:
builder.add_text(chunk_text)
builder.build_index(INDEX_PATH)
del builder
gc.collect()
tracker.checkpoint("After index building")
# Find existing LEANN index
index_paths = [
"./test_leann_comparison/comparison.leann",
]
index_path = None
for path in index_paths:
if os.path.exists(path + ".meta.json"):
index_path = path
break
if not index_path:
print("❌ LEANN index not found. Please build it first")
return {"peak_memory": float("inf"), "error": "Index not found"}
# Measure runtime memory overhead
print("\nMeasuring runtime memory overhead...")
runtime_start_mem = get_memory_usage()
print(f"Before load memory: {runtime_start_mem:.1f} MB")
tracker.checkpoint("Before load memory")
# Load searcher
searcher = LeannSearcher(index_path)
tracker.checkpoint("After searcher loading")
print("Running search queries...")
queries = [
"什么是盘古大模型以及盘古开发过程中遇到了什么阴暗面,任务令一般在什么城市颁发",
"What is LEANN and how does it work?",
"华为诺亚方舟实验室的主要研究内容",
]
for i, query in enumerate(queries):
start_time = time.time()
# Use same parameters as Faiss: top_k=20, ef=120 (complexity parameter)
_ = searcher.search(query, top_k=20, ef=120)
query_time = time.time() - start_time
print(f"Query {i + 1} time: {query_time:.3f}s")
tracker.checkpoint(f"After query {i + 1}")
runtime_end_mem = get_memory_usage()
runtime_overhead = runtime_end_mem - runtime_start_mem
peak_memory = tracker.summary()
print(f"Runtime Memory Overhead: {runtime_overhead:.1f} MB")
# Get storage size before cleanup
storage_size = 0
INDEX_DIR = Path(index_path).parent
if INDEX_DIR.exists():
total_size = 0
for dirpath, _, filenames in os.walk(str(INDEX_DIR)):
for filename in filenames:
# Only count actual index files, skip text data and backups
if filename.endswith((".old", ".tmp", ".bak", ".jsonl", ".json")):
continue
# Count .index, .idx, .map files (actual index structures)
if filename.endswith((".index", ".idx", ".map")):
filepath = os.path.join(dirpath, filename)
total_size += os.path.getsize(filepath)
storage_size = total_size / (1024 * 1024) # Convert to MB
# Clean up
del searcher
gc.collect()
return {
"peak_memory": peak_memory,
"storage_size": storage_size,
}
def main():
"""Run comparison tests"""
print("Storage + Search Memory Comparison: Faiss HNSW vs LEANN HNSW")
print("=" * 60)
# Test Faiss HNSW
faiss_results = test_faiss_hnsw()
# Force garbage collection
gc.collect()
time.sleep(2)
# Test LEANN HNSW
leann_results = test_leann_hnsw()
# Final comparison
print("\n" + "=" * 60)
print("STORAGE + SEARCH MEMORY COMPARISON")
print("=" * 60)
# Get storage sizes
faiss_storage_size = 0
leann_storage_size = leann_results.get("storage_size", 0)
# Get Faiss storage size using Python
if os.path.exists("./storage_faiss"):
total_size = 0
for dirpath, _, filenames in os.walk("./storage_faiss"):
for filename in filenames:
filepath = os.path.join(dirpath, filename)
total_size += os.path.getsize(filepath)
faiss_storage_size = total_size / (1024 * 1024) # Convert to MB
print("Faiss HNSW:")
if "error" in faiss_results:
print(f" ❌ Failed: {faiss_results['error']}")
else:
print(f" Search Memory: {faiss_results['peak_memory']:.1f} MB")
print(f" Storage Size: {faiss_storage_size:.1f} MB")
print("\nLEANN HNSW:")
if "error" in leann_results:
print(f" ❌ Failed: {leann_results['error']}")
else:
print(f" Search Memory: {leann_results['peak_memory']:.1f} MB")
print(f" Storage Size: {leann_storage_size:.1f} MB")
# Calculate improvements only if both tests succeeded
if "error" not in faiss_results and "error" not in leann_results:
memory_ratio = faiss_results["peak_memory"] / leann_results["peak_memory"]
print("\nLEANN vs Faiss Performance:")
memory_saving = faiss_results["peak_memory"] - leann_results["peak_memory"]
print(f" Search Memory: {memory_ratio:.1f}x less ({memory_saving:.1f} MB saved)")
# Storage comparison
if leann_storage_size > faiss_storage_size:
storage_ratio = leann_storage_size / faiss_storage_size
print(f" Storage Size: {storage_ratio:.1f}x larger (LEANN uses more storage)")
elif faiss_storage_size > leann_storage_size:
storage_ratio = faiss_storage_size / leann_storage_size
print(f" Storage Size: {storage_ratio:.1f}x smaller (LEANN uses less storage)")
else:
print(" Storage Size: similar")
else:
if "error" not in leann_results:
print("\n✅ LEANN HNSW completed successfully!")
print(f"📊 Search Memory: {leann_results['peak_memory']:.1f} MB")
print(f"📊 Storage Size: {leann_storage_size:.1f} MB")
if "error" not in faiss_results:
print("\n✅ Faiss HNSW completed successfully!")
print(f"📊 Search Memory: {faiss_results['peak_memory']:.1f} MB")
print(f"📊 Storage Size: {faiss_storage_size:.1f} MB")
if __name__ == "__main__":
main()