Commit Graph

324 Commits

Author SHA1 Message Date
Andy Lee
7fbb6c98ef docs: nit 2025-07-29 14:30:04 -07:00
Andy Lee
914a248c28 docs: Add introduction for Common Parameters section
- Add 'Flexible Configuration' heading with descriptive sentence
- Create parallel structure with 'Generation Model Setup' section
- Improve document flow and readability
2025-07-29 14:16:33 -07:00
Andy Lee
55fc5862f9 docs: Fix collapsible sections
- Make Common Parameters collapsible (as it's lengthy reference material)
- Keep CLI Installation visible (important for users to see immediately)
- Better information hierarchy
2025-07-29 14:14:26 -07:00
Andy Lee
fd97b8dfa8 style: format 2025-07-29 14:11:49 -07:00
Andy Lee
57959947a1 docs: Add collapsible section for CLI installation
- Wrap CLI installation instructions in details/summary tags
- Keep consistent with other collapsible sections in README
- Improve document readability and navigation
2025-07-29 14:10:30 -07:00
Andy Lee
cc0c091ca5 docs: Clarify CLI global installation process
- Explain the transition from venv to global installation
- Add upgrade command for global installation
- Make it clear that global install allows usage without venv activation
2025-07-29 14:06:16 -07:00
Andy Lee
ff389c7d8d docs: Add CLI installation instructions
- Add two installation options: venv and global uv tool
- Clearly explain when to use each option
- Make CLI more accessible for daily use
2025-07-29 14:05:33 -07:00
Andy Lee
6780a8eaba docs: polish applications 2025-07-29 14:04:34 -07:00
Andy Lee
984056f126 docs: Reorganize parameter documentation structure
- Move common parameters to a dedicated section before all examples
- Rename sections to 'X-Specific Arguments' for clarity
- Remove duplicate common parameters from individual examples
- Better information architecture for users
2025-07-29 14:01:19 -07:00
Andy Lee
bd4451bf50 docs: Make example commands more representative
- Add default values to parameter descriptions
- Replace generic examples with real-world use cases
- Focus on data-source-specific features in examples
- Remove redundant demonstrations of common parameters
2025-07-29 13:59:29 -07:00
Andy Lee
34e313f64a docs: Improve parameter categorization in README
- Clearly separate core (shared) vs specific parameters
- Move LLM and embedding examples to 'Example Commands' section
- Add descriptive comments for all specific parameters
- Keep only truly data-source-specific parameters in specific sections
2025-07-29 13:54:47 -07:00
Andy Lee
ddc789b231 fix: Restore embedding-mode parameter to all examples
- All examples now have --embedding-mode parameter (unified interface benefit)
- Default is 'sentence-transformers' (consistent with original behavior)
- Users can now use OpenAI or MLX embeddings with any data source
- Maintains functional equivalence with original scripts
2025-07-29 13:33:40 -07:00
Andy Lee
ff1b622bdd refactor: Remove old example scripts and migration references
- Delete old example scripts (mail_reader_leann.py, google_history_reader_leann.py, etc.)
- Remove migration hints and backward compatibility
- Update tests to use new unified examples directly
- Clean up all references to old script names
- Users now only see the new unified interface
2025-07-29 12:39:36 -07:00
Andy Lee
3cde4fc7b3 fix: Fix pre-commit issues and update tests
- Fix import sorting and unused imports
- Update type annotations to use built-in types (list, dict) instead of typing.List/Dict
- Fix trailing whitespace and end-of-file issues
- Fix Chinese fullwidth comma to regular comma
- Update test_main_cli.py to test_document_rag.py
- Add backward compatibility test for main_cli_example.py
- Pass all pre-commit hooks (ruff, ruff-format, etc.)
2025-07-29 10:19:05 -07:00
Andy Lee
4e3bcda5fa fix: Update CI tests for new unified examples interface
- Rename test_main_cli.py to test_document_rag.py
- Update all references from main_cli_example.py to document_rag.py
- Update tests/README.md documentation

The tests now properly test the new unified interface while maintaining
the same test coverage and functionality.
2025-07-28 23:16:51 -07:00
Andy Lee
46f6f76fc3 refactor: Unify examples interface with BaseRAGExample
- Create BaseRAGExample base class for all RAG examples
- Refactor 4 examples to use unified interface:
  - document_rag.py (replaces main_cli_example.py)
  - email_rag.py (replaces mail_reader_leann.py)
  - browser_rag.py (replaces google_history_reader_leann.py)
  - wechat_rag.py (replaces wechat_history_reader_leann.py)
- Maintain 100% parameter compatibility with original files
- Add interactive mode support for all examples
- Unify parameter names (--max-items replaces --max-emails/--max-entries)
- Update README.md with new examples usage
- Add PARAMETER_CONSISTENCY.md documenting all parameter mappings
- Keep main_cli_example.py for backward compatibility with migration notice

All default values, LeannBuilder parameters, and chunking settings
remain identical to ensure full compatibility with existing indexes.
2025-07-28 23:11:16 -07:00
yichuan520030910320
19bcc07814 change readme discription 2025-07-28 20:52:45 -07:00
yichuan520030910320
8356e3c668 changr to openai main cli 2025-07-28 17:39:14 -07:00
GitHub Actions
08eac5c821 chore: release v0.1.16 v0.1.16 2025-07-29 00:15:18 +00:00
Andy Lee
4671ed9b36 Fix macos ABI by using system default clang (#11)
* fix: auto-detect normalized embeddings and use cosine distance

- Add automatic detection for normalized embedding models (OpenAI, Voyage AI, Cohere)
- Automatically set distance_metric='cosine' for normalized embeddings
- Add warnings when using non-optimal distance metrics
- Implement manual L2 normalization in HNSW backend (custom Faiss build lacks normalize_L2)
- Fix DiskANN zmq_port compatibility with lazy loading strategy
- Add documentation for normalized embeddings feature

This fixes the low accuracy issue when using OpenAI text-embedding-3-small model with default MIPS metric.

* style: format

* feat: add OpenAI embeddings support to google_history_reader_leann.py

- Add --embedding-model and --embedding-mode arguments
- Support automatic detection of normalized embeddings
- Works correctly with cosine distance for OpenAI embeddings

* feat: add --use-existing-index option to google_history_reader_leann.py

- Allow using existing index without rebuilding
- Useful for testing pre-built indices

* fix: Improve OpenAI embeddings handling in HNSW backend

* fix: improve macOS C++ compatibility and add CI tests

* refactor: improve test structure and fix main_cli example

- Move pytest configuration from pytest.ini to pyproject.toml
- Remove unnecessary run_tests.py script (use test extras instead)
- Fix main_cli_example.py to properly use command line arguments for LLM config
- Add test_readme_examples.py to test code examples from README
- Refactor tests to use pytest fixtures and parametrization
- Update test documentation to reflect new structure
- Set proper environment variables in CI for test execution

* fix: add --distance-metric support to DiskANN embedding server and remove obsolete macOS ABI test markers

- Add --distance-metric parameter to diskann_embedding_server.py for consistency with other backends
- Remove pytest.skip and pytest.xfail markers for macOS C++ ABI issues as they have been fixed
- Fix test assertions to handle SearchResult objects correctly
- All tests now pass on macOS with the C++ ABI compatibility fixes

* chore: update lock file with test dependencies

* docs: remove obsolete C++ ABI compatibility warnings

- Remove outdated macOS C++ compatibility warnings from README
- Simplify CI workflow by removing macOS-specific failure handling
- All tests now pass consistently on macOS after ABI fixes

* fix: update macOS deployment target for DiskANN to 13.3

- DiskANN uses sgesdd_ LAPACK function which is only available on macOS 13.3+
- Update MACOSX_DEPLOYMENT_TARGET from 11.0 to 13.3 for DiskANN builds
- This fixes the compilation error on GitHub Actions macOS runners

* fix: align Python version requirements to 3.9

- Update root project to support Python 3.9, matching subpackages
- Restore macOS Python 3.9 support in CI
- This fixes the CI failure for Python 3.9 environments

* fix: handle MPS memory issues in CI tests

- Use smaller MiniLM-L6-v2 model (384 dimensions) for README tests in CI
- Skip other memory-intensive tests in CI environment
- Add minimal CI tests that don't require model loading
- Set CI environment variable and disable MPS fallback
- Ensure README examples always run correctly in CI

* fix: remove Python 3.10+ dependencies for compatibility

- Comment out llama-index-readers-docling and llama-index-node-parser-docling
- These packages require Python >= 3.10 and were causing CI failures on Python 3.9
- Regenerate uv.lock file to resolve dependency conflicts

* fix: use virtual environment in CI instead of system packages

- uv-managed Python environments don't allow --system installs
- Create and activate virtual environment before installing packages
- Update all CI steps to use the virtual environment

* add some env in ci

* fix: use --find-links to install platform-specific wheels

- Let uv automatically select the correct wheel for the current platform
- Fixes error when trying to install macOS wheels on Linux
- Simplifies the installation logic

* fix: disable OpenMP parallelism in CI to avoid libomp crashes

- Set OMP_NUM_THREADS=1 to avoid OpenMP thread synchronization issues
- Set MKL_NUM_THREADS=1 for single-threaded MKL operations
- This prevents segfaults in LayerNorm on macOS CI runners
- Addresses the libomp compatibility issues with PyTorch on Apple Silicon

* skip several macos test because strange issue on ci

---------

Co-authored-by: yichuan520030910320 <yichuan_wang@berkeley.edu>
2025-07-28 17:14:42 -07:00
yichuan520030910320
055c086398 add ablation of embedding model compare 2025-07-28 14:43:42 -07:00
Andy Lee
d505dcc5e3 Fix/OpenAI embeddings cosine distance (#10)
* fix: auto-detect normalized embeddings and use cosine distance

- Add automatic detection for normalized embedding models (OpenAI, Voyage AI, Cohere)
- Automatically set distance_metric='cosine' for normalized embeddings
- Add warnings when using non-optimal distance metrics
- Implement manual L2 normalization in HNSW backend (custom Faiss build lacks normalize_L2)
- Fix DiskANN zmq_port compatibility with lazy loading strategy
- Add documentation for normalized embeddings feature

This fixes the low accuracy issue when using OpenAI text-embedding-3-small model with default MIPS metric.

* style: format

* feat: add OpenAI embeddings support to google_history_reader_leann.py

- Add --embedding-model and --embedding-mode arguments
- Support automatic detection of normalized embeddings
- Works correctly with cosine distance for OpenAI embeddings

* feat: add --use-existing-index option to google_history_reader_leann.py

- Allow using existing index without rebuilding
- Useful for testing pre-built indices

* fix: Improve OpenAI embeddings handling in HNSW backend
2025-07-28 14:35:49 -07:00
Andy Lee
261006c36a docs: revert 2025-07-27 22:07:36 -07:00
GitHub Actions
b2eba23e21 chore: release v0.1.15 v0.1.15 2025-07-28 05:05:30 +00:00
yichuan520030910320
e9ee687472 nit: fix readme 2025-07-27 21:56:05 -07:00
yichuan520030910320
6f5d5e4a77 fix some readme 2025-07-27 21:50:09 -07:00
Andy Lee
5c8921673a fix: auto-detect normalized embeddings and use cosine distance (#8)
* fix: auto-detect normalized embeddings and use cosine distance

- Add automatic detection for normalized embedding models (OpenAI, Voyage AI, Cohere)
- Automatically set distance_metric='cosine' for normalized embeddings
- Add warnings when using non-optimal distance metrics
- Implement manual L2 normalization in HNSW backend (custom Faiss build lacks normalize_L2)
- Fix DiskANN zmq_port compatibility with lazy loading strategy
- Add documentation for normalized embeddings feature

This fixes the low accuracy issue when using OpenAI text-embedding-3-small model with default MIPS metric.

* style: format
2025-07-27 21:19:29 -07:00
yichuan520030910320
e9d2d420bd fix some readme 2025-07-27 20:48:23 -07:00
yichuan520030910320
ebabfad066 Merge branch 'main' of https://github.com/yichuan-w/LEANN 2025-07-27 20:44:36 -07:00
yichuan520030910320
e6f612b5e8 fix install and readme 2025-07-27 20:44:28 -07:00
Andy Lee
51c41acd82 docs: add comprehensive CONTRIBUTING.md guide with pre-commit setup 2025-07-27 20:40:42 -07:00
yichuan520030910320
455f93fb7c fix emaple and add pypi example 2025-07-27 18:20:13 -07:00
yichuan520030910320
48207c3b69 add pypi example 2025-07-27 17:08:49 -07:00
yichuan520030910320
4de1caa40f fix redame install method 2025-07-27 17:00:28 -07:00
yichuan520030910320
60eaa8165c fix precommit and fix redame install method 2025-07-27 16:36:30 -07:00
yichuan520030910320
c1a5d0c624 fix readme 2025-07-27 02:24:28 -07:00
yichuan520030910320
af1790395a fix ruff errors and formatting 2025-07-27 02:22:54 -07:00
yichuan520030910320
383c6d8d7e add clear instructions 2025-07-27 02:19:27 -07:00
yichuan520030910320
bc0d839693 Merge branch 'main' of https://github.com/yichuan-w/LEANN 2025-07-27 02:07:41 -07:00
yichuan520030910320
8596562de5 add pip install option to README 2025-07-27 02:06:40 -07:00
GitHub Actions
5d09586853 chore: release v0.1.14 v0.1.14 2025-07-27 08:50:56 +00:00
Andy Lee
a7cba078dd chore: consolidate essential fixes and add pre-commit hooks
- Add pre-commit configuration with ruff and black
- Fix lint CI job to use uv tool install instead of sync
- Add essential LlamaIndex dependencies to leann-core

Co-Authored-By: Yichuan Wang <73766326+yichuan-w@users.noreply.github.com>
2025-07-27 01:24:24 -07:00
Andy Lee
b3e9ee96fa fix: resolve all ruff linting errors and add lint CI check
- Fix ambiguous fullwidth characters (commas, parentheses) in strings and comments
- Replace Chinese comments with English equivalents
- Fix unused imports with proper noqa annotations for intentional imports
- Fix bare except clauses with specific exception types
- Fix redefined variables and undefined names
- Add ruff noqa annotations for generated protobuf files
- Add lint and format check to GitHub Actions CI pipeline
2025-07-26 22:38:13 -07:00
yichuan520030910320
8537a6b17e default args change 2025-07-26 21:51:14 -07:00
yichuan520030910320
7c8d7dc5c2 tones down 2025-07-26 21:47:55 -07:00
yichuan520030910320
8e23d663e6 Merge branch 'main' of https://github.com/yichuan-w/LEANN 2025-07-26 21:46:02 -07:00
yichuan520030910320
8a3994bf80 update colab now it works perfect 2025-07-26 21:45:56 -07:00
GitHub Actions
8375f601ba chore: release v0.1.13 v0.1.13 2025-07-27 01:08:17 +00:00
yichuan520030910320
c87c0fe662 update colab install & fix colab path 2025-07-26 18:07:31 -07:00
yichuan520030910320
73927b68ef Merge branch 'main' of https://github.com/yichuan-w/LEANN 2025-07-26 17:09:55 -07:00