feat: support multiple input formats for --docs argument

- Add support for multiple directories: --docs ./src ./tests ./config
- Add support for individual files: --docs ./file1.py ./file2.txt
- Add support for mixed files and directories: --docs ./README.md ./src/ ./config.json
- Add git ls-files integration: --docs $(git ls-files)
- Add git submodule detection and skip logic to avoid indexing third-party dependencies
- Add comprehensive error handling for path resolution issues
- Update MCP README with advanced usage examples including git integration
- Fix ruff linting issues with closure variable binding

Breaking changes: None - fully backward compatible with existing single directory usage

Examples:
  leann build my-repo --docs $(git ls-files) --embedding-mode sentence-transformers --embedding-model all-MiniLM-L6-v2 --backend hnsw
  leann build my-code --docs ./src ./tests ./docs --embedding-mode sentence-transformers --embedding-model all-MiniLM-L6-v2 --backend hnsw
  leann build my-configs --docs ./package.json ./tsconfig.json ./webpack.config.js --embedding-mode sentence-transformers --embedding-model all-MiniLM-L6-v2 --backend hnsw

.github/workflows/build-reusable.yml

@@ -64,16 +64,6 @@ jobs:
             python: '3.12'
           - os: macos-14
             python: '3.13'
-          - os: macos-15
-            python: '3.9'
-          - os: macos-15
-            python: '3.10'
-          - os: macos-15
-            python: '3.11'
-          - os: macos-15
-            python: '3.12'
-          - os: macos-15
-            python: '3.13'
           - os: macos-13
             python: '3.9'
           - os: macos-13
@@ -157,14 +147,7 @@ jobs:
             # Use system clang for better compatibility
             export CC=clang
             export CXX=clang++
-            # Homebrew libraries on each macOS version require matching minimum version
-            if [[ "${{ matrix.os }}" == "macos-13" ]]; then
-              export MACOSX_DEPLOYMENT_TARGET=13.0
-            elif [[ "${{ matrix.os }}" == "macos-14" ]]; then
-              export MACOSX_DEPLOYMENT_TARGET=14.0
-            elif [[ "${{ matrix.os }}" == "macos-15" ]]; then
-              export MACOSX_DEPLOYMENT_TARGET=15.0
-            fi
+            export MACOSX_DEPLOYMENT_TARGET=11.0
             uv build --wheel --python ${{ matrix.python }} --find-links ${GITHUB_WORKSPACE}/packages/leann-core/dist
           else
             uv build --wheel --python ${{ matrix.python }} --find-links ${GITHUB_WORKSPACE}/packages/leann-core/dist
@@ -178,14 +161,7 @@ jobs:
             export CC=clang
             export CXX=clang++
             # DiskANN requires macOS 13.3+ for sgesdd_ LAPACK function
-            # But Homebrew libraries on each macOS version require matching minimum version
-            if [[ "${{ matrix.os }}" == "macos-13" ]]; then
-              export MACOSX_DEPLOYMENT_TARGET=13.3
-            elif [[ "${{ matrix.os }}" == "macos-14" ]]; then
-              export MACOSX_DEPLOYMENT_TARGET=14.0
-            elif [[ "${{ matrix.os }}" == "macos-15" ]]; then
-              export MACOSX_DEPLOYMENT_TARGET=15.0
-            fi
+            export MACOSX_DEPLOYMENT_TARGET=13.3
             uv build --wheel --python ${{ matrix.python }} --find-links ${GITHUB_WORKSPACE}/packages/leann-core/dist
           else
             uv build --wheel --python ${{ matrix.python }} --find-links ${GITHUB_WORKSPACE}/packages/leann-core/dist
@@ -221,24 +197,10 @@ jobs:
       - name: Repair wheels (macOS)
         if: runner.os == 'macOS'
         run: |
-          # Determine deployment target based on runner OS
-          # Must match the Homebrew libraries for each macOS version
-          if [[ "${{ matrix.os }}" == "macos-13" ]]; then
-            HNSW_TARGET="13.0"
-            DISKANN_TARGET="13.3"
-          elif [[ "${{ matrix.os }}" == "macos-14" ]]; then
-            HNSW_TARGET="14.0"
-            DISKANN_TARGET="14.0"
-          elif [[ "${{ matrix.os }}" == "macos-15" ]]; then
-            HNSW_TARGET="15.0"
-            DISKANN_TARGET="15.0"
-          fi
-
           # Repair HNSW wheel
           cd packages/leann-backend-hnsw
           if [ -d dist ]; then
-            export MACOSX_DEPLOYMENT_TARGET=$HNSW_TARGET
-            delocate-wheel -w dist_repaired -v --require-target-macos-version $HNSW_TARGET dist/*.whl
+            delocate-wheel -w dist_repaired -v dist/*.whl
             rm -rf dist
             mv dist_repaired dist
           fi
@@ -247,8 +209,7 @@ jobs:
           # Repair DiskANN wheel
           cd packages/leann-backend-diskann
           if [ -d dist ]; then
-            export MACOSX_DEPLOYMENT_TARGET=$DISKANN_TARGET
-            delocate-wheel -w dist_repaired -v --require-target-macos-version $DISKANN_TARGET dist/*.whl
+            delocate-wheel -w dist_repaired -v dist/*.whl
             rm -rf dist
             mv dist_repaired dist
           fi
@@ -288,8 +249,8 @@ jobs:
           # Activate virtual environment
           source .venv/bin/activate || source .venv/Scripts/activate
 
-          # Run tests
-          pytest -v tests/
+          # Run all tests
+          pytest tests/
 
       - name: Run sanity checks (optional)
         run: |

packages/leann-backend-diskann/pyproject.toml

@@ -4,8 +4,8 @@ build-backend = "scikit_build_core.build"
 
 [project]
 name = "leann-backend-diskann"
-version = "0.2.9"
-dependencies = ["leann-core==0.2.9", "numpy", "protobuf>=3.19.0"]
+version = "0.2.7"
+dependencies = ["leann-core==0.2.7", "numpy", "protobuf>=3.19.0"]
 
 [tool.scikit-build]
 # Key: simplified CMake path

packages/leann-backend-hnsw/pyproject.toml

@@ -6,10 +6,10 @@ build-backend = "scikit_build_core.build"
 
 [project]
 name = "leann-backend-hnsw"
-version = "0.2.9"
+version = "0.2.7"
 description = "Custom-built HNSW (Faiss) backend for the Leann toolkit."
 dependencies = [
-    "leann-core==0.2.9",
+    "leann-core==0.2.7",
     "numpy",
     "pyzmq>=23.0.0",
     "msgpack>=1.0.0",

packages/leann-core/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "leann-core"
-version = "0.2.9"
+version = "0.2.7"
 description = "Core API and plugin system for LEANN"
 readme = "README.md"
 requires-python = ">=3.9"

packages/leann/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "leann"
-version = "0.2.9"
+version = "0.2.7"
 description = "LEANN - The smallest vector index in the world. RAG Everything with LEANN!"
 readme = "README.md"
 requires-python = ">=3.9"