Commit Graph

13 Commits

Author SHA1 Message Date
Andy Lee
4671ed9b36 Fix macos ABI by using system default clang (#11)
* fix: auto-detect normalized embeddings and use cosine distance

- Add automatic detection for normalized embedding models (OpenAI, Voyage AI, Cohere)
- Automatically set distance_metric='cosine' for normalized embeddings
- Add warnings when using non-optimal distance metrics
- Implement manual L2 normalization in HNSW backend (custom Faiss build lacks normalize_L2)
- Fix DiskANN zmq_port compatibility with lazy loading strategy
- Add documentation for normalized embeddings feature

This fixes the low accuracy issue when using OpenAI text-embedding-3-small model with default MIPS metric.

* style: format

* feat: add OpenAI embeddings support to google_history_reader_leann.py

- Add --embedding-model and --embedding-mode arguments
- Support automatic detection of normalized embeddings
- Works correctly with cosine distance for OpenAI embeddings

* feat: add --use-existing-index option to google_history_reader_leann.py

- Allow using existing index without rebuilding
- Useful for testing pre-built indices

* fix: Improve OpenAI embeddings handling in HNSW backend

* fix: improve macOS C++ compatibility and add CI tests

* refactor: improve test structure and fix main_cli example

- Move pytest configuration from pytest.ini to pyproject.toml
- Remove unnecessary run_tests.py script (use test extras instead)
- Fix main_cli_example.py to properly use command line arguments for LLM config
- Add test_readme_examples.py to test code examples from README
- Refactor tests to use pytest fixtures and parametrization
- Update test documentation to reflect new structure
- Set proper environment variables in CI for test execution

* fix: add --distance-metric support to DiskANN embedding server and remove obsolete macOS ABI test markers

- Add --distance-metric parameter to diskann_embedding_server.py for consistency with other backends
- Remove pytest.skip and pytest.xfail markers for macOS C++ ABI issues as they have been fixed
- Fix test assertions to handle SearchResult objects correctly
- All tests now pass on macOS with the C++ ABI compatibility fixes

* chore: update lock file with test dependencies

* docs: remove obsolete C++ ABI compatibility warnings

- Remove outdated macOS C++ compatibility warnings from README
- Simplify CI workflow by removing macOS-specific failure handling
- All tests now pass consistently on macOS after ABI fixes

* fix: update macOS deployment target for DiskANN to 13.3

- DiskANN uses sgesdd_ LAPACK function which is only available on macOS 13.3+
- Update MACOSX_DEPLOYMENT_TARGET from 11.0 to 13.3 for DiskANN builds
- This fixes the compilation error on GitHub Actions macOS runners

* fix: align Python version requirements to 3.9

- Update root project to support Python 3.9, matching subpackages
- Restore macOS Python 3.9 support in CI
- This fixes the CI failure for Python 3.9 environments

* fix: handle MPS memory issues in CI tests

- Use smaller MiniLM-L6-v2 model (384 dimensions) for README tests in CI
- Skip other memory-intensive tests in CI environment
- Add minimal CI tests that don't require model loading
- Set CI environment variable and disable MPS fallback
- Ensure README examples always run correctly in CI

* fix: remove Python 3.10+ dependencies for compatibility

- Comment out llama-index-readers-docling and llama-index-node-parser-docling
- These packages require Python >= 3.10 and were causing CI failures on Python 3.9
- Regenerate uv.lock file to resolve dependency conflicts

* fix: use virtual environment in CI instead of system packages

- uv-managed Python environments don't allow --system installs
- Create and activate virtual environment before installing packages
- Update all CI steps to use the virtual environment

* add some env in ci

* fix: use --find-links to install platform-specific wheels

- Let uv automatically select the correct wheel for the current platform
- Fixes error when trying to install macOS wheels on Linux
- Simplifies the installation logic

* fix: disable OpenMP parallelism in CI to avoid libomp crashes

- Set OMP_NUM_THREADS=1 to avoid OpenMP thread synchronization issues
- Set MKL_NUM_THREADS=1 for single-threaded MKL operations
- This prevents segfaults in LayerNorm on macOS CI runners
- Addresses the libomp compatibility issues with PyTorch on Apple Silicon

* skip several macos test because strange issue on ci

---------

Co-authored-by: yichuan520030910320 <yichuan_wang@berkeley.edu>
2025-07-28 17:14:42 -07:00
yichuan520030910320
af1790395a fix ruff errors and formatting 2025-07-27 02:22:54 -07:00
Andy Lee
3d4c75a56c fix: add missing scripts directory to git
- Remove scripts/ from .gitignore
- Add build_and_test.sh for local testing
- Add bump_version.sh for version updates (used by CI)
- Add release.sh and upload_to_pypi.sh for publishing
- Fixes CI error: ./scripts/bump_version.sh: No such file or directory
2025-07-24 14:13:14 -07:00
yichuan520030910320
90120d4dff upd the structure in the chat for better perf 2025-07-22 17:00:56 -07:00
yichuan520030910320
aec2291f04 add embedding api 2025-07-17 22:29:31 -07:00
yichuan520030910320
4f83086788 update readme and auto find email 2025-07-17 18:15:17 -07:00
yichuan520030910320
74ffd7ec64 add email test code 2025-07-11 23:59:47 -07:00
yichuan520030910320
04c9684488 add email test code 2025-07-09 15:06:31 -07:00
yichuan520030910320
dfca00c21b add mac support in this repo 2025-07-07 18:22:24 -07:00
yichuan520030910320
637dab379e add workaround code 2025-07-07 23:13:47 +00:00
Andy Lee
cf17c85607 Make DiskANN and HNSW work on main example (#2)
* fix: diskann zmq port and passages

* feat: auto discovery of packages and fix passage gen for diskann
2025-07-05 22:18:12 -07:00
yichuan520030910320
368474d036 fix larger file read and add faq 2025-07-03 23:25:36 +00:00
yichuan520030910320
46f6cc100b Initial commit 2025-06-30 09:05:05 +00:00