Commit Graph

355 Commits

Author SHA1 Message Date
Andy Lee
c994635af6 sky: expand leann-build.yaml with configurable params and flags (backend, recompute, compact, embedding options) 2025-08-13 14:18:48 -07:00
Andy Lee
23b80647c5 docs: dedupe recomputation guidance; keep single Low-resource setups section 2025-08-13 14:10:10 -07:00
Andy Lee
50121972ee cli: add --no-recompute and --no-recompute-embeddings flags; docs: clarify HNSW requires --no-compact when disabling recompute 2025-08-13 14:09:05 -07:00
Andy Lee
07e5f10204 docs: consolidate low-resource guidance into config guide; README points to it 2025-08-13 14:08:23 -07:00
Andy Lee
58711bff7e docs: add low-resource note in README; point to config guide; suggest OpenAI embeddings, SkyPilot remote build, and --no-recompute 2025-08-13 14:06:22 -07:00
Andy Lee
a69464eb16 docs: add SkyPilot template and instructions for running embeddings/index build on cloud GPU 2025-08-13 14:01:32 -07:00
Andy Lee
46565b9249 docs: follows #34, patch leann backends into tool environment 2025-08-12 17:56:02 -07:00
GitHub Actions
3dad76126a chore: release v0.2.9 v0.2.9 2025-08-12 23:00:12 +00:00
Andy Lee
18e28bda32 feat: Add macOS 15 support for M4 Mac compatibility (#38)
* feat: add macOS 15 support for M4 Mac compatibility

- Add macos-15 CI builds for Python 3.9-3.13
- Update MACOSX_DEPLOYMENT_TARGET from 11.0/13.3 to 14.0 for broader compatibility
- Addresses issue #34 with Mac M4 wheel compatibility

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: ensure wheels are compatible with older macOS versions

- Set MACOSX_DEPLOYMENT_TARGET=11.0 for HNSW backend (broad compatibility)
- Set MACOSX_DEPLOYMENT_TARGET=13.0 for DiskANN backend (required for LAPACK)
- Add --require-target-macos-version to delocate-wheel commands
- This fixes CI failures on macos-13 runners while maintaining M4 Mac support

Fixes the issue where wheels built on macos-14 runners were incorrectly
tagged as macosx_14_0, preventing installation on macos-13 runners.

* fix: use macOS 13.3 for DiskANN backend as required by LAPACK

DiskANN requires macOS 13.3+ for sgesdd_ LAPACK function, so we must
use 13.3 as the deployment target, not 13.0.

* fix: match deployment target with runner OS for library compatibility

The issue is that Homebrew libraries on macOS 14 runners are built for
macOS 14 and cannot be downgraded. We must use different deployment
targets based on the runner OS:

- macOS 13 runners: Can build for macOS 11.0 (HNSW) and 13.3 (DiskANN)
- macOS 14 runners: Must build for macOS 14.0 (due to system libraries)

This ensures delocate-wheel succeeds by matching the deployment target
with the actual minimum version required by bundled libraries.

* fix: add macOS 15 support to deployment target configuration

The issue extends to macOS 15 runners where Homebrew libraries are built
for macOS 15. We must handle all runner versions explicitly:

- macOS 13 runners: Can build for macOS 11.0 (HNSW) and 13.3 (DiskANN)
- macOS 14 runners: Must build for macOS 14.0 (system libraries)
- macOS 15 runners: Must build for macOS 15.0 (system libraries)

This ensures wheels are properly tagged for their actual minimum
supported macOS version, matching the bundled libraries.

* fix: correct macOS deployment targets based on Homebrew library requirements

The key insight is that Homebrew libraries on each macOS version are
compiled for that specific version:
- macOS 13: Libraries require macOS 13.0 minimum
- macOS 14: Libraries require macOS 14.0 minimum
- macOS 15: Libraries require macOS 15.0 minimum

We cannot build wheels for older macOS versions than what the bundled
Homebrew libraries require. This means:
- macOS 13 runners: Build for macOS 13.0+ (HNSW) and 13.3+ (DiskANN)
- macOS 14 runners: Build for macOS 14.0+
- macOS 15 runners: Build for macOS 15.0+

This ensures delocate-wheel succeeds by matching deployment targets
with the actual minimum versions required by system libraries.

* fix: restore macOS 15 build matrix and correct test path

- Add back macOS 15 configurations for Python 3.9-3.13
- Fix pytest path from test/ to tests/ (correct directory name)

The macOS 15 support was accidentally missing from the matrix, and
pytest was looking for the wrong directory name.

---------

Co-authored-by: Claude <noreply@anthropic.com>
2025-08-12 14:01:02 -07:00
GitHub Actions
609fa62fd5 chore: release v0.2.8 v0.2.8 2025-08-12 19:04:51 +00:00
Yichuan Wang
eab13434ef feat: support multiple input formats for --docs argument (#39) 2025-08-12 10:30:31 -07:00
yichuan520030910320
b2390ccc14 [Ollama] fix ollama recompute 2025-08-12 00:24:20 -07:00
Andy Lee
e8fca2c84a fix: detect and report Ollama embedding dimension inconsistency (#37)
- Add validation for embedding dimension consistency in Ollama mode
- Provide clear error message with troubleshooting steps when dimensions mismatch
- Fail fast instead of silent fallback to prevent data corruption

Fixes #31
2025-08-11 17:41:52 -07:00
yichuan520030910320
790ae14f69 fix missing file 2025-08-11 17:35:45 -07:00
yichuan520030910320
ac363072e6 Merge branch 'main' of https://github.com/yichuan-w/LEANN 2025-08-11 17:31:04 -07:00
yichuan520030910320
93465af46c docs: update README fix wrong data file 2025-08-11 17:29:54 -07:00
Andy Lee
792ece67dc ci: add Mac Intel (x86_64) build support (#26)
* ci: add Mac Intel (x86_64) build support

* fix: auto-detect Homebrew path for Intel vs Apple Silicon Macs

This fixes the hardcoded /opt/homebrew path which only works on Apple
Silicon Macs. Intel Macs use /usr/local as the Homebrew prefix.

* fix: auto-detect Homebrew paths for both DiskANN and HNSW backends

- Fix DiskANN CMakeLists.txt path reference
- Add macOS environment variable detection for OpenMP_ROOT
- Support both Intel (/usr/local) and Apple Silicon (/opt/homebrew) paths

* fix: improve macOS build reliability with proper OpenMP path detection

- Add proper CMAKE_PREFIX_PATH and OpenMP_ROOT detection for both Intel and Apple Silicon Macs
- Set LDFLAGS and CPPFLAGS for all Homebrew packages to ensure CMake can find them
- Apply CMAKE_ARGS to both HNSW and DiskANN backends for consistent builds
- Fix hardcoded paths that caused build failures on Intel Macs (macos-13)

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: add abseil library path for protobuf compilation on macOS

- Include abseil in CMAKE_PREFIX_PATH for both Intel and Apple Silicon Macs
- Add explicit absl_DIR CMake variable to help find abseil for protobuf
- Fixes 'absl/log/absl_log.h' file not found error during compilation

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: add abseil include path to CPPFLAGS for both Intel and Apple Silicon

- Add -I/opt/homebrew/opt/abseil/include to CPPFLAGS for Apple Silicon
- Add -I/usr/local/opt/abseil/include to CPPFLAGS for Intel
- Fixes 'absl/log/absl_log.h' file not found by ensuring abseil headers are in compiler include path

Root cause: CMAKE_PREFIX_PATH alone wasn't sufficient - compiler needs explicit -I flags

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: clean build system and Python 3.9 compatibility

Build system improvements:
- Simplify macOS environment detection using brew --prefix
- Remove complex hardcoded paths and CMAKE_ARGS
- Let CMake automatically find Homebrew packages via CMAKE_PREFIX_PATH
- Clean separation between Intel (/usr/local) and Apple Silicon (/opt/homebrew)

Python 3.9 compatibility:
- Set ruff target-version to py39 to match project requirements
- Replace str | None with Union[str, None] in type annotations
- Add Union imports where needed
- Fix core interface, CLI, chat, and embedding server files

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: type

* fix: ensure CMAKE_PREFIX_PATH is passed to backend builds

- Add CMAKE_ARGS with CMAKE_PREFIX_PATH and OpenMP_ROOT for both HNSW and DiskANN backends
- This ensures CMake can find Homebrew packages on both Intel (/usr/local) and Apple Silicon (/opt/homebrew)
- Fixes the issue where CMake was still looking for hardcoded paths instead of using detected ones

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: configure CMake paths in pyproject.toml for proper Homebrew detection

- Add CMAKE_PREFIX_PATH and OpenMP_ROOT environment variable mapping in both backends
- Remove CMAKE_ARGS from GitHub Actions workflow (cleaner separation)
- Ensure scikit-build-core correctly uses environment variables for CMake configuration
- This should fix the hardcoded /opt/homebrew paths on Intel Macs

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: remove hardcoded /opt/homebrew paths from DiskANN CMake

- Auto-detect Homebrew libomp path using OpenMP_ROOT environment variable
- Fallback to CMAKE_PREFIX_PATH/opt/libomp if OpenMP_ROOT not set
- Final fallback to brew --prefix libomp for auto-detection
- Maintains backwards compatibility with old hardcoded path
- Fixes Intel Mac builds that were failing due to hardcoded Apple Silicon paths

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: update DiskANN submodule with macOS Intel/Apple Silicon compatibility fixes

- Auto-detect Homebrew libomp path using OpenMP_ROOT environment variable
- Exclude mkl_set_num_threads on macOS (uses Accelerate framework instead of MKL)
- Fixes compilation on Intel Macs by using correct /usr/local paths

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: update DiskANN submodule with SIMD function name corrections

- Fix _mm128_loadu_ps to _mm_loadu_ps (and similar functions)
- This is a known issue in upstream DiskANN code where incorrect function names were used
- Resolves compilation errors on macOS Intel builds

References: Known DiskANN issue with SIMD intrinsics naming

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: update DiskANN submodule with type cast fix for signed char templates

- Add missing type casts (float*)a and (float*)b in SSE2 version
- This matches the existing type casts in the AVX version
- Fixes compilation error when instantiating DistanceInnerProduct<int8_t>
- Resolves "cannot initialize const float* with const signed char*" error

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: update Faiss submodule with override keyword fix

- Add missing override keyword to IDSelectorModulo::is_member function
- Fixes C++ compilation warning that was treated as error due to -Werror flag
- Resolves "warning: 'is_member' overrides a member function but is not marked 'override'"
- Improves code conformance to modern C++ best practices

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: update Faiss submodule with override keyword fix

* fix: update DiskANN submodule with additional type cast fix

- Add missing type cast in DistanceFastL2::norm function SSE2 version
- Fixes const float* = const signed char* compilation error
- Ensures consistent type casting across all SIMD code paths
- Resolves template instantiation error for DistanceFastL2<int8_t>

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* debug: simplify wheel compatibility checking

- Fix YAML syntax error in debug step
- Use simpler approach to show platform tags and wheel names
- This will help identify platform tag compatibility issues

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: use correct Python version for wheel builds

- Replace --python python with --python ${{ matrix.python }}
- This ensures wheels are built for the correct Python version in each matrix job
- Fixes Python version mismatch where cp39 wheels were used in cp311 environments

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: resolve wheel installation conflicts in CI matrix builds

Fix issue where multiple Python versions' wheels in the same dist directory
caused installation conflicts during CI testing. The problem occurred when
matrix builds for different Python versions accumulated wheels in shared
directories, and uv pip install would find incompatible wheels.

Changes:
- Add Python version detection using matrix.python variable
- Convert Python version to wheel tag format (e.g., 3.11 -> cp311)
- Use find with version-specific pattern matching to select correct wheels
- Add explicit error handling if no matching wheel is found

This ensures each CI job installs only wheels compatible with its specific
Python version, preventing "A path dependency is incompatible with the
current platform" errors.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: ensure virtual environment uses correct Python version in CI

Fix issue where uv venv was creating virtual environments with a different
Python version than specified in the matrix, causing wheel compatibility
errors. The problem occurred when the system had multiple Python versions
and uv venv defaulted to a different version than intended.

Changes:
- Add --python ${{ matrix.python }} flag to uv venv command
- Ensures virtual environment matches the matrix-specified Python version
- Fixes "The wheel is compatible with CPython 3.X but you're using CPython 3.Y" errors

This ensures wheel installation selects and installs the correctly built
wheels that match the runtime Python version.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: complete Python 3.9 type annotation compatibility fixes

Fix remaining Python 3.9 incompatible type annotations throughout the
leann-core package that were causing test failures in CI. The union operator
(|) syntax for type hints was introduced in Python 3.10 and causes
"TypeError: unsupported operand type(s) for |" errors in Python 3.9.

Changes:
- Convert dict[str, Any] | None to Optional[dict[str, Any]]
- Convert int | None to Optional[int]
- Convert subprocess.Popen | None to Optional[subprocess.Popen]
- Convert LeannBackendFactoryInterface | None to Optional[LeannBackendFactoryInterface]
- Add missing Optional imports to all affected files

This resolves all test failures related to type annotation syntax and ensures
compatibility with Python 3.9 as specified in pyproject.toml.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: complete Python 3.9 type annotation fixes in backend packages

Fix remaining Python 3.9 incompatible type annotations in backend packages
that were causing test failures. The union operator (|) syntax for type hints
was introduced in Python 3.10 and causes "TypeError: unsupported operand
type(s) for |" errors in Python 3.9.

Changes in leann-backend-diskann:
- Convert zmq_port: int | None to Optional[int] in diskann_backend.py
- Convert passages_file: str | None to Optional[str] in diskann_embedding_server.py
- Add Optional imports to both files

Changes in leann-backend-hnsw:
- Convert zmq_port: int | None to Optional[int] in hnsw_backend.py
- Add Optional import

This resolves the final test failures related to type annotation syntax and
ensures full Python 3.9 compatibility across all packages.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: remove Python 3.10+ zip strict parameter for Python 3.9 compatibility

Remove the strict=False parameter from zip() call in api.py as it was
introduced in Python 3.10 and causes "TypeError: zip() takes no keyword
arguments" in Python 3.9.

The strict parameter controls whether zip() raises an exception when the
iterables have different lengths. Since we're not relying on this behavior
and the code works correctly without it, removing it maintains the same
functionality while ensuring Python 3.9 compatibility.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: ensure leann-core package is built on all platforms, not just Ubuntu

This fixes the issue where CI was installing leann-core from PyPI instead of
using locally built package with Python 3.9 compatibility fixes.

* fix: build and install leann meta package on all platforms

The leann meta package is pure Python and platform-independent, so there's
no reason to restrict it to Ubuntu only. This ensures all platforms use
consistent local builds instead of falling back to PyPI versions.

* fix: restrict MLX dependencies to Apple Silicon Macs only

MLX framework only supports Apple Silicon (ARM64) Macs, not Intel x86_64.
Add platform_machine == 'arm64' condition to prevent installation failures
on Intel Macs (macos-13).

* cleanup: simplify CI configuration

- Remove debug step with non-existent 'uv pip debug' command
- Simplify wheel installation logic - let uv handle compatibility
- Use -e .[test] instead of manually listing all test dependencies

* fix: install backend wheels before meta packages

Install backend wheels first to ensure they're available when core/meta
packages are installed, preventing uv from trying to resolve backend
dependencies from PyPI.

* fix: use local leann-core when building backend packages

Add --find-links to backend builds to ensure they use the locally built
leann-core with fixed MLX dependencies instead of downloading from PyPI.

Also bump leann-core version to 0.2.8 to ensure clean dependency resolution.

* fix: use absolute path for find-links and upgrade backend version

- Use GITHUB_WORKSPACE for absolute path to ensure find-links works
- Upgrade leann-backend-hnsw to 0.2.8 to match leann-core version

* fix: use absolute path for find-links and upgrade backend version

- Use GITHUB_WORKSPACE for absolute path to ensure find-links works
- Upgrade leann-backend-hnsw to 0.2.8 to match leann-core version

* fix: correct version consistency for --find-links to work properly

- All packages now use version 0.2.7 consistently
- Backend packages can find exact leann-core==0.2.7 from local build
- This ensures --find-links works during CI builds instead of falling back to PyPI

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: revert all packages to consistent version 0.2.7

- This PR should not bump versions, only fix Intel Mac build
- Version bumps should be done in release_manual workflow
- All packages now use 0.2.7 consistently for --find-links to work

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: use --find-links during package installation to avoid PyPI MLX conflicts

- Backend wheels contain Requires-Dist: leann-core==0.2.7
- Without --find-links, uv resolves this from PyPI which has MLX for all Darwin
- With --find-links, uv uses local leann-core with proper platform restrictions
- Root cause: dependency resolution happens at install time, not just build time
- Local test confirms this fixes Intel Mac MLX dependency issues

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: restrict MLX dependencies to ARM64 Macs in workspace pyproject.toml

- Root pyproject.toml also had MLX dependencies without platform_machine restriction
- This caused test dependency installation to fail on Intel Macs
- Now consistent with packages/leann-core/pyproject.toml platform restrictions

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* chore: cleanup unused files and fix GitHub Actions warnings

- Remove unused packages/leann-backend-diskann/CMakeLists.txt
  (DiskANN uses cmake.source-dir=third_party/DiskANN instead)
- Replace macos-latest with macos-14 to avoid migration warnings
  (macos-latest will migrate to macOS 15 on August 4, 2025)
- Keep packages/leann-backend-hnsw/CMakeLists.txt (needed for Faiss config)

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: properly handle Python 3.13 support with PyTorch compatibility

- Support Python 3.13 on most platforms (Ubuntu, ARM64 Mac)
- Exclude Intel Mac + Python 3.13 combination due to PyTorch wheel availability
- PyTorch <2.5 supports Intel Mac but not Python 3.13
- PyTorch 2.5+ supports Python 3.13 but not Intel Mac x86_64
- Document limitation in CI configuration comments
- Update README badges with detailed Python version support and CI status

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-08-11 16:39:58 -07:00
GitHub Actions
239e35e2e6 chore: release v0.2.7 v0.2.7 2025-08-11 03:11:46 +00:00
Andy Lee
2fac0c6fbf fix: improve gitignore and Jupyter notebook support (#28)
- Add nbconvert dependency for .ipynb file support
- Replace manual gitignore parsing with gitignore-parser library
- Proper recursive .gitignore handling (all subdirectories)
- Fix compliance with Git gitignore behavior
- Simplify code and improve reliability

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-authored-by: Claude <noreply@anthropic.com>
2025-08-10 20:02:46 -07:00
yichuan520030910320
9801aa581b [Readme]update embedding model config according to reddit feedback 2025-08-09 21:33:33 -07:00
GitHub Actions
5e97916608 chore: release v0.2.6 v0.2.6 2025-08-10 03:39:45 +00:00
Andy Lee
8b9c2be8c9 Feat/claude code refine (#24)
* feat: Add Ollama embedding support for local embedding models

* docs: Add clear documentation for Ollama embedding usage

* fix: remove leann_ask

* docs: remove ollama embedding extra instructions

* simplify MCP interface for Claude Code

- Remove unnecessary search parameters: search_mode, recompute_embeddings, file_types, min_score
- Remove leann_clear tool (not needed for Claude Code workflow)
- Streamline search to only use: query, index_name, top_k, complexity
- Keep core tools: leann_index, leann_search, leann_status, leann_list

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* remove leann_index from MCP interface

Users should use CLI command 'leann build' to create indexes first.
MCP now only provides search functionality:
- leann_search: search existing indexes
- leann_status: check index health
- leann_list: list available indexes

This separates index creation (CLI) from search (Claude Code).

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* improve CLI with auto project name and .gitignore support

- Make index_name optional, auto-use current directory name
- Read .gitignore patterns and respect them during indexing
- Add _read_gitignore_patterns() to parse .gitignore files
- Add _should_exclude_file() for pattern matching
- Apply exclusion patterns to both PDF and general file processing
- Show helpful messages about gitignore usage

Now users can simply run: leann build
And it will use project name + respect .gitignore patterns.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
2025-08-09 20:37:17 -07:00
Andy Lee
3ff5aac8e0 Add Ollama embedding support to enable local embedding models (#22)
* feat: Add Ollama embedding support for local embedding models

* docs: Add clear documentation for Ollama embedding usage

* feat: Enhance Ollama embedding with better error handling and concurrent processing

- Add intelligent model validation and suggestions (inspired by OllamaChat)
- Implement concurrent processing for better performance
- Add retry mechanism with timeout handling
- Provide user-friendly error messages with emojis
- Auto-detect and recommend embedding models
- Add text truncation for long texts
- Improve progress bar display logic

* docs: don't mention it in README
2025-08-08 18:44:07 -07:00
yichuan520030910320
67fef60466 [Readme]More about claude code 2025-08-08 16:05:35 -07:00
GitHub Actions
b6ab6f1993 chore: release v0.2.5 v0.2.5 2025-08-08 22:32:27 +00:00
joshuashaffer
9f2e82a838 Propagate hosts argument for ollama through chat.py (#21)
* Propigate hosts argument for ollama through chat.py

* Apply suggestions from code review

Good AI slop suggestions.

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
2025-08-08 15:31:15 -07:00
yichuan520030910320
0b2b799d5a [README]fix instructions in cli 2025-08-08 01:04:13 -07:00
yichuan520030910320
0f790fbbd9 docs: polish README and add optimized MCP integration image
- Improve grammar and sentence structure in MCP section
- Add proper markdown image formatting with relative paths
- Optimize mcp_leann.png size (1.3MB -> 224KB)
- Update data description to be more specific about Chinese content
2025-08-08 00:58:36 -07:00
GitHub Actions
387ae21eba chore: release v0.2.4 v0.2.4 2025-08-08 07:14:51 +00:00
Andy Lee
3cc329c3e7 fix: remove hardcoded paths from MCP server and documentation 2025-08-08 00:08:56 -07:00
Andy Lee
5567302316 feat: promote Claude Code integration as primary RAG feature 2025-08-07 23:19:19 -07:00
GitHub Actions
075d4bd167 chore: release v0.2.2 v0.2.2 2025-08-08 01:58:40 +00:00
yichuan520030910320
e4bcc76f88 fix cli & make recompute default true 2025-08-07 18:58:04 -07:00
yichuan520030910320
710e83b1fd fix cli if there is no other type of doc to make it robust 2025-08-07 18:46:05 -07:00
yichuan520030910320
c96d653072 more support for type of docs in cli 2025-08-07 18:14:03 -07:00
Andy Lee
8b22d2b5d3 Merge pull request #19 from yichuan-w/feature/claude-code-research
Feature/claude code research
2025-08-05 23:02:34 -07:00
Andy Lee
4cb544ee38 docs: Update co-contributors with GitHub usernames (#18)
* docs: Update co-contributors with GitHub usernames

* docs: Use GitHub links for co-contributors and improve order

* docs: Change to Contributors and use personal homepage

* docs: Specify core contributors and welcome new contributors
2025-08-05 17:43:59 -07:00
yichuan520030910320
f94ce63d51 add gpt oss! serve your RAG using ollama 2025-08-05 16:49:52 -07:00
GitHub Actions
4271ff9d84 chore: release v0.2.1 v0.2.1 2025-08-05 05:50:56 +00:00
Andy Lee
0d448c4a41 docs: config guidance (#17)
* docs: config guidance

* feat: add comprehensive configuration guide and update README

- Create docs/configuration-guide.md with detailed guidance on:
  - Embedding model selection (small/medium/large)
  - Index selection (HNSW vs DiskANN)
  - LLM engine and model comparison
  - Parameter tuning (build/search complexity, top-k)
  - Performance optimization tips
  - Deep dive into LEANN's recomputation feature
- Update README.md to link to the configuration guide
- Include latest 2025 model recommendations (Qwen3, DeepSeek-R1, O3-mini)

* chore: move evaluation data .gitattributes to correct location

* docs: Weaken DiskANN emphasis in README

- Change backend description to emphasize HNSW as default
- DiskANN positioned as optional for billion-scale datasets
- Simplify evaluation commands to be more generic

* docs: Adjust DiskANN positioning in features and roadmap

- features.md: Put HNSW/FAISS first as default, DiskANN as optional
- roadmap.md: Reorder to show HNSW integration before DiskANN
- Consistent with positioning DiskANN as advanced option for large-scale use

* docs: Improve configuration guide based on feedback

- List specific files in default data/ directory (2 AI papers, literature, tech report)
- Update examples to use English and better RAG-suitable queries
- Change full dataset reference to use --max-items -1
- Adjust small model guidance about upgrading to larger models when time allows
- Update top-k defaults to reflect actual default of 20
- Ensure consistent use of full model name Qwen/Qwen3-Embedding-0.6B
- Reorder optimization steps, move MLX to third position
- Remove incorrect chunk size tuning guidance
- Change README from 'Having trouble' to 'Need best practices'

* docs: Address all configuration guide feedback

- Fix grammar: 'If time is not a constraint' instead of 'time expense is not large'
- Highlight Qwen3-Embedding-0.6B performance (nearly OpenAI API level)
- Add OpenAI quick start section with configuration example
- Fold Cloud vs Local trade-offs into collapsible section
- Update HNSW as 'default and recommended for extreme low storage'
- Add DiskANN beta warning and explain PQ+rerank architecture
- Expand Ollama models: add qwen3:0.6b, 4b, 7b variants
- Note OpenAI as current default but recommend Ollama switch
- Add 'need to install extra software' warning for Ollama
- Remove incorrect latency numbers from search-complexity recommendations

* docs: add a link
2025-08-04 22:50:32 -07:00
yichuan520030910320
af5599e33c fix data example name 2025-08-04 17:49:03 -07:00
yichuan520030910320
efdf6d917a fix diskann for faster mode 2025-08-04 17:46:46 -07:00
Andy Lee
dd71ac8d71 feat: implement smart memory configuration for DiskANN (#16)
- Add intelligent memory calculation based on data size and system specs
- search_memory_maximum: 1/10 of embedding size (controls PQ compression)
- build_memory_maximum: 50% of available RAM (controls sharding)
- Provides optimal balance between performance and memory usage
- Automatic fallback to default values if parameters are explicitly provided
v0.2.0
2025-08-04 14:36:29 -07:00
GitHub Actions
8bee1d4100 chore: release v0.2.0 2025-08-04 21:34:31 +00:00
yichuan520030910320
33521d6d00 add logs 2025-08-04 14:15:52 -07:00
Andy Lee
8899734952 refactor: Unify examples interface with BaseRAGExample (#12)
* refactor: Unify examples interface with BaseRAGExample

- Create BaseRAGExample base class for all RAG examples
- Refactor 4 examples to use unified interface:
  - document_rag.py (replaces main_cli_example.py)
  - email_rag.py (replaces mail_reader_leann.py)
  - browser_rag.py (replaces google_history_reader_leann.py)
  - wechat_rag.py (replaces wechat_history_reader_leann.py)
- Maintain 100% parameter compatibility with original files
- Add interactive mode support for all examples
- Unify parameter names (--max-items replaces --max-emails/--max-entries)
- Update README.md with new examples usage
- Add PARAMETER_CONSISTENCY.md documenting all parameter mappings
- Keep main_cli_example.py for backward compatibility with migration notice

All default values, LeannBuilder parameters, and chunking settings
remain identical to ensure full compatibility with existing indexes.

* fix: Update CI tests for new unified examples interface

- Rename test_main_cli.py to test_document_rag.py
- Update all references from main_cli_example.py to document_rag.py
- Update tests/README.md documentation

The tests now properly test the new unified interface while maintaining
the same test coverage and functionality.

* fix: Fix pre-commit issues and update tests

- Fix import sorting and unused imports
- Update type annotations to use built-in types (list, dict) instead of typing.List/Dict
- Fix trailing whitespace and end-of-file issues
- Fix Chinese fullwidth comma to regular comma
- Update test_main_cli.py to test_document_rag.py
- Add backward compatibility test for main_cli_example.py
- Pass all pre-commit hooks (ruff, ruff-format, etc.)

* refactor: Remove old example scripts and migration references

- Delete old example scripts (mail_reader_leann.py, google_history_reader_leann.py, etc.)
- Remove migration hints and backward compatibility
- Update tests to use new unified examples directly
- Clean up all references to old script names
- Users now only see the new unified interface

* fix: Restore embedding-mode parameter to all examples

- All examples now have --embedding-mode parameter (unified interface benefit)
- Default is 'sentence-transformers' (consistent with original behavior)
- Users can now use OpenAI or MLX embeddings with any data source
- Maintains functional equivalence with original scripts

* docs: Improve parameter categorization in README

- Clearly separate core (shared) vs specific parameters
- Move LLM and embedding examples to 'Example Commands' section
- Add descriptive comments for all specific parameters
- Keep only truly data-source-specific parameters in specific sections

* docs: Make example commands more representative

- Add default values to parameter descriptions
- Replace generic examples with real-world use cases
- Focus on data-source-specific features in examples
- Remove redundant demonstrations of common parameters

* docs: Reorganize parameter documentation structure

- Move common parameters to a dedicated section before all examples
- Rename sections to 'X-Specific Arguments' for clarity
- Remove duplicate common parameters from individual examples
- Better information architecture for users

* docs: polish applications

* docs: Add CLI installation instructions

- Add two installation options: venv and global uv tool
- Clearly explain when to use each option
- Make CLI more accessible for daily use

* docs: Clarify CLI global installation process

- Explain the transition from venv to global installation
- Add upgrade command for global installation
- Make it clear that global install allows usage without venv activation

* docs: Add collapsible section for CLI installation

- Wrap CLI installation instructions in details/summary tags
- Keep consistent with other collapsible sections in README
- Improve document readability and navigation

* style: format

* docs: Fix collapsible sections

- Make Common Parameters collapsible (as it's lengthy reference material)
- Keep CLI Installation visible (important for users to see immediately)
- Better information hierarchy

* docs: Add introduction for Common Parameters section

- Add 'Flexible Configuration' heading with descriptive sentence
- Create parallel structure with 'Generation Model Setup' section
- Improve document flow and readability

* docs: nit

* fix: Fix issues in unified examples

- Add smart path detection for data directory
- Fix add_texts -> add_text method call
- Handle both running from project root and examples directory

* fix: Fix async/await and add_text issues in unified examples

- Remove incorrect await from chat.ask() calls (not async)
- Fix add_texts -> add_text method calls
- Verify search-complexity correctly maps to efSearch parameter
- All examples now run successfully

* feat: Address review comments

- Add complexity parameter to LeannChat initialization (default: search_complexity)
- Fix chunk-size default in README documentation (256, not 2048)
- Add more index building parameters as CLI arguments:
  - --backend-name (hnsw/diskann)
  - --graph-degree (default: 32)
  - --build-complexity (default: 64)
  - --no-compact (disable compact storage)
  - --no-recompute (disable embedding recomputation)
- Update README to document all new parameters

* feat: Add chunk-size parameters and improve file type filtering

- Add --chunk-size and --chunk-overlap parameters to all RAG examples
- Preserve original default values for each data source:
  - Document: 256/128 (optimized for general documents)
  - Email: 256/25 (smaller overlap for email threads)
  - Browser: 256/128 (standard for web content)
  - WeChat: 192/64 (smaller chunks for chat messages)
- Make --file-types optional filter instead of restriction in document_rag
- Update README to clarify interactive mode and parameter usage
- Fix LLM default model documentation (gpt-4o, not gpt-4o-mini)

* feat: Update documentation based on review feedback

- Add MLX embedding example to README
- Clarify examples/data content description (two papers, Pride and Prejudice, Chinese README)
- Move chunk parameters to common parameters section
- Remove duplicate chunk parameters from document-specific section

* docs: Emphasize diverse data sources in examples/data description

* fix: update default embedding models for better performance

- Change WeChat, Browser, and Email RAG examples to use all-MiniLM-L6-v2
- Previous Qwen/Qwen3-Embedding-0.6B was too slow for these use cases
- all-MiniLM-L6-v2 is a fast 384-dim model, ideal for large-scale personal data

* add response highlight

* change rebuild logic

* fix some example

* feat: check if k is larger than #docs

* fix: WeChat history reader bugs and refactor wechat_rag to use unified architecture

* fix email wrong -1 to process all file

* refactor: reorgnize all examples/ and test/

* refactor: reorganize examples and add link checker

* fix: add init.py

* fix: handle certificate errors in link checker

* fix wechat

* merge

* docs: update README to use proper module imports for apps

- Change from 'python apps/xxx.py' to 'python -m apps.xxx'
- More professional and pythonic module calling
- Ensures proper module resolution and imports
- Better separation between apps/ (production tools) and examples/ (demos)

---------

Co-authored-by: yichuan520030910320 <yichuan_wang@berkeley.edu>
2025-08-03 23:06:24 -07:00
Andy Lee
54df6310c5 fix: diskann build and prevent termination from hanging
- Fix OpenMP library linking in DiskANN CMake configuration
- Add timeout protection for HuggingFace model loading to prevent hangs
- Improve embedding server process termination with better timeouts
- Make DiskANN backend default enabled alongside HNSW
- Update documentation to reflect both backends included by default
2025-08-03 21:16:52 -07:00
yichuan520030910320
19bcc07814 change readme discription 2025-07-28 20:52:45 -07:00
yichuan520030910320
8356e3c668 changr to openai main cli 2025-07-28 17:39:14 -07:00
GitHub Actions
08eac5c821 chore: release v0.1.16 v0.1.16 2025-07-29 00:15:18 +00:00