Commit Graph

419 Commits

Author SHA1 Message Date
aakash
dfae37d0ee docs: Simplify README by removing excessive documentation
- Remove overly complex CLI reference and getting started sections (lines 61-334)
- Remove emojis from section headers for cleaner appearance
- Keep README simple and focused as requested
- Maintain essential MCP integration documentation

This addresses feedback to keep documentation minimal and avoid auto-generated content.
2025-10-06 16:00:22 -07:00
aakash
a43fafe44e style: Remove trailing whitespace from README.md
- Fix trailing whitespace issues found by pre-commit hooks
- Ensures consistent formatting across documentation
2025-10-06 15:18:06 -07:00
aakash
32710cf5a1 docs: Comprehensive documentation improvements for better user experience
- Add clear step-by-step Getting Started Guide for new users
- Add comprehensive CLI Reference with all commands and options
- Improve installation instructions with clear steps and verification
- Add detailed troubleshooting section for common issues (Ollama, OpenAI, etc.)
- Clarify difference between CLI commands and specialized apps
- Add environment variables documentation
- Improve MCP integration documentation with CLI integration examples
- Address user feedback about confusing installation and setup process

This resolves documentation gaps that made LEANN difficult for non-specialists to use.
2025-10-06 15:15:15 -07:00
aakash
c24e62a3d9 style: Apply ruff formatting to embedding_compute.py
- Break long logger.warning lines for better readability
- Fixes pre-commit hook formatting requirements
2025-10-06 14:54:17 -07:00
aakash
4ccbbf3e6b fix: Add comprehensive SentenceTransformer version compatibility
- Handle both old and new sentence-transformers versions
- Gracefully fallback from advanced parameters to basic initialization
- Catch TypeError for model_kwargs/tokenizer_kwargs and use basic SentenceTransformer init
- Ensures compatibility across different CI environments and local setups
- Maintains optimization benefits where supported while ensuring broad compatibility

This resolves test failures in CI environments with older sentence-transformers versions.
2025-10-06 14:51:12 -07:00
aakash
d3e6cfa1f7 fix: Resolve SentenceTransformer model_kwargs parameter conflict
- Fix local_files_only parameter conflict in embedding_compute.py
- Create separate copies of model_kwargs and tokenizer_kwargs for local vs network loading
- Prevents parameter conflicts when falling back from local to network loading
- Resolves TypeError in test_readme_examples.py tests

This addresses the SentenceTransformer initialization issues in CI tests.
2025-10-06 14:40:04 -07:00
aakash
523eef7e79 style: Apply ruff formatting - add trailing commas
- Add trailing commas to super().__init__ calls in SlackMCPRAG and TwitterMCPRAG
- Fixes ruff format pre-commit hook requirements
2025-10-06 13:59:29 -07:00
aakash
99bb98748d fix: Update MCP RAG classes to match BaseRAGExample signature
- Fix SlackMCPRAG and TwitterMCPRAG __init__ methods to provide required parameters
- Add name, description, and default_index_name to super().__init__ calls
- Resolves test failures: test_slack_rag_initialization and test_twitter_rag_initialization

This fixes the TypeError caused by BaseRAGExample requiring additional parameters.
2025-10-06 13:57:07 -07:00
aakash
fe904ec992 fix: Apply pre-commit hooks formatting fixes
- Remove trailing whitespace from all files
- Fix ruff formatting issues (2 errors resolved)
- Apply consistent code formatting across 3 files
- Ensure all files pass pre-commit validation

This resolves all CI formatting failures.
2025-10-06 13:47:16 -07:00
aakash
d2432b45f6 fix: Apply pre-commit formatting changes
- Fix trailing whitespace in all files
- Apply ruff formatting to match project standards
- Ensure consistent code style across all MCP integration files

This commit applies the exact changes that pre-commit hooks expect.
2025-10-06 13:45:05 -07:00
aakash
28521775f8 fix: Apply final formatting fixes for pre-commit hooks
- Remove unused imports (asyncio, pathlib.Path)
- Remove unused class imports in demo script
- Ensure all files pass ruff format and pre-commit checks

This should resolve all remaining CI linting issues.
2025-10-06 13:43:00 -07:00
aakash
98cdcf600b fix: Resolve linting issues in MCP integration
- Replace deprecated typing.Dict/List with built-in dict/list
- Fix boolean comparisons (== True/False) to direct checks
- Remove unused variables in demo script
- Update type annotations to use modern Python syntax

All pre-commit hooks should now pass.
2025-10-06 02:23:55 -07:00
aakash
1fdc9dfbfa feat: Add MCP integration support for Slack and Twitter
- Implement SlackMCPReader for connecting to Slack MCP servers
- Implement TwitterMCPReader for connecting to Twitter MCP servers
- Add SlackRAG and TwitterRAG applications with full CLI support
- Support live data fetching via Model Context Protocol (MCP)
- Add comprehensive documentation and usage examples
- Include connection testing capabilities with --test-connection flag
- Add standalone tests for core functionality
- Update README with detailed MCP integration guide
- Add Aakash Suresh to Active Contributors

Resolves #36
2025-10-03 20:03:33 -07:00
Aakash Suresh
658bce47ef Feature/imessage rag support (#131) 2025-10-02 10:40:57 -07:00
Andy Lee
6b399ad8d2 fix: launch another port when updating 2025-09-30 13:00:00 -07:00
Andy Lee
16f35aa067 Update faiss for batch distances calc & caching when updating 2025-09-30 12:42:40 -07:00
Andy Lee
ab9c6bd69e Fix update. Should launch embedding server first (#130)
* fix: set ntotal for storage as well

* fix: launch embedding server before adding
2025-09-30 00:58:17 -07:00
yichuan520030910320
e2b37914ce add dynamic add test 2025-09-30 00:48:46 -07:00
Andy Lee
e588100674 fix: set ntotal for storage as well (#129) 2025-09-29 20:43:16 -07:00
Andy Lee
fecee94af1 Experiments (#68)
* feat: finance bench

* docs: results

* chore: ignroe data README

* feat: fix financebench

* feat: laion, also required idmaps support

* style: format

* style: format

* fix: resolve ruff linting errors

- Remove unused variables in benchmark scripts
- Rename unused loop variables to follow convention

* feat: enron email bench

* experiments for running DiskANN & BM25 on Arch 4090

* style: format

* chore(ci): remove paru-bin submodule and config to fix checkout --recurse-submodules

* docs: data

* docs: data updated

* fix: as package

* fix(ci): only run pre-commit

* chore: use http url of astchunk; use group for some dev deps

* fix(ci): should checkout modules as well since `uv sync` checks

* fix(ci): run with lint only

* fix: find links to install wheels available

* CI: force local wheels in uv install step

* CI: install local wheels via file paths

* CI: pick wheels matching current Python tag

* CI: handle python tag mismatches for local wheels

* CI: use matrix python venv and set macOS deployment target

* CI: revert install step to match main

* CI: use uv group install with local wheel selection

* CI: rely on setup-uv for Python and tighten group install

* CI: install build deps with uv python interpreter

* CI: use temporary uv venv for build deps

* CI: add build venv scripts path for wheel repair
2025-09-24 11:19:04 -07:00
yichuan520030910320
01475c10a0 add img 2025-09-23 23:25:05 -07:00
yichuan520030910320
c8aa063f48 merge main 2025-09-23 23:21:53 -07:00
yichuan520030910320
576beb13db add doc about multimodal 2025-09-23 23:21:03 -07:00
Andy Lee
63c7b0c8a3 Fix restart embedding server when passages change (#117)
* fix: restart embedding server when passages change

* fix: restore python 3.9 typing compatibility
2025-09-23 22:28:36 -07:00
Andy Lee
ec889f7ef4 Allow 'leann ask' to accept a positional question (#116) 2025-09-23 21:18:57 -07:00
Yi-Ting Chiu
322e5c162d docs: open ai api compatibility (#118) 2025-09-23 21:17:50 -07:00
Yichuan Wang
edde0cdeb2 [Feat] ColQwen intergration (#111)
* add colqwen stuff

* add colqwen stuff and pass ruff

* remove ipynb
2025-09-23 17:51:29 -07:00
Andy Lee
db7ba27ff6 feat: Add support for configurable local LLM endpoints (#115)
* feat: support configurable local llm endpoints

* docs
2025-09-23 15:12:13 -07:00
Andy Lee
5f7806e16f Introducing dynamic index update (#108)
* feat: Add GitHub PR and issue templates for better contributor experience

* simplify: Make templates more concise and user-friendly

* fix: enable is_compact=False, is_recompute=True

* feat: update when recompute

* test

* fix: real recompute

* refactor

* fix: compare with no-recompute

* fix: test
2025-09-21 22:56:27 -07:00
yichuan-w
d034e2195b fix build from source in diskann 2025-09-20 19:52:29 +00:00
yichuan520030910320
43894ff605 update submodule 2025-09-19 17:03:55 -07:00
yichuan520030910320
10311cc611 change the submodule for easy pull 2025-09-19 17:02:09 -07:00
Andy Lee
ad0d2faabc feat: Add GitHub PR and issue templates (#105)
* feat: Add GitHub PR and issue templates for better contributor experience

* simplify: Make templates more concise and user-friendly
2025-09-19 13:51:36 -07:00
Andy Lee
e93c0dec6f [Fix] Enable AST chunking when installed (package chunking utils) (#101)
* fix(core): package chunking utils for AST chunking; re-export in apps; CLI imports packaged utils

* style

* chore: fix ruff warnings (RUF059, F401)

* style
v0.3.4
2025-09-17 18:44:00 -07:00
GitHub Actions
c5a29f849a chore: release v0.3.4 2025-09-16 20:45:22 +00:00
Yichuan Wang
3b8dc6368e Ast fork (#92) 2025-09-08 18:43:31 -07:00
Aiden Huang
e309f292de docs(mcp): add root llms.txt for MCP discovery; update MCP README to reference it; refs #76 (#91) 2025-09-07 14:39:58 -07:00
AWS Mcleod
0d9f92ea0f Add grep search functionality - Issue #86 (#87)
* Add grep search functionality to LeannSearcher

- Add use_grep parameter to search method
- Implement grep-based search on .jsonl files
- Add fallback Python regex search
- Support same SearchResult format as semantic search

Addresses issue #86

* fix: resolve linting errors

* docs: add grep search example

* docs: add grep search to README examples

* refactor: remove regex fallback, move grep example to features section

* docs: add grep search to Advanced Features with comprehensive guide
2025-09-05 13:48:07 -07:00
GitHub Actions
b0b353d279 chore: release v0.3.3 v0.3.3 2025-09-02 21:29:56 +00:00
Andy Lee
4dffdfedbe feat: Add ARM64 Linux wheel support for leann-backend-hnsw (#83)
* feat: Add ARM64 Linux wheel support for leann-backend-hnsw

* fix: Use OpenBLAS for ARM64 Linux builds instead of Intel MKL

* fix: Configure Faiss with SVE optimization for ARM64 builds

- Set FAISS_OPT_LEVEL to "sve" for ARM64 architecture
- Disable x86-specific SIMD instructions (AVX2, AVX512, SSE4.1)
- Use ARM64-native SVE optimization as per Faiss conda build scripts
- Add architecture detection and proper configuration messages

Fixes compilation error: "xmmintrin.h: No such file or directory"
on ubuntu-24.04-arm runners.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Apply ARM64 compatibility fix directly to Faiss submodule

- Modify faiss/impl/pq.cpp to use x86-specific preprocessor conditions
- Remove patch file approach in favor of direct submodule modification
- Update CMakeLists.txt to reflect the submodule changes
- Fixes ARM64 Linux compilation by preventing x86 SIMD header inclusion

This resolves the "xmmintrin.h: No such file or directory" error
when building ARM64 Linux wheels for Docker compatibility.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* chore: Update Faiss submodule to include ARM64 compatibility fix

- Points to commit ed96ff7d with x86-specific preprocessor conditions
- Enables successful ARM64 Linux wheel builds

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* retrigger ci

* fix: Use different optimization levels for ARM64 based on platform

- Use SVE optimization only for ARM64 Linux
- Use generic optimization for ARM64 macOS to avoid clang SVE issues
- Fixes macOS ARM64 compilation errors with SVE instructions

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* feat: Update DiskANN submodule with OpenBLAS fallback support

- Points to commit 5c396c4 with ARM64 Linux OpenBLAS support
- Enables DiskANN to build on ARM64 Linux using standard BLAS libraries
- Resolves Intel MKL dependency issues for Docker ARM64 deployments

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Update DiskANN submodule with ZeroMQ polling configuration

- Points to commit 3a1016e with explicit polling method setup
- Resolves ZeroMQ autodetection issues on ARM64 Linux
- Ensures stable cross-platform ZeroMQ builds

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* retrigger ci

* fix: Update DiskANN submodule with ARM64 compiler flags fix

- Points to commit a0dc600 with architecture-specific compiler flags
- Removes x86 SIMD flags on ARM64 Linux to fix compilation errors
- Enables successful ARM64 Linux wheel builds

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Update DiskANN submodule with ARM64 compiler flags fix

- Points to commit 0921664 with architecture-specific compiler flags
- Removes x86 SIMD flags on ARM64 Linux to fix compilation errors
- Enables successful ARM64 Linux wheel builds

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* retrigger ci

* fix: Update DiskANN submodule with cross-platform prefetch support

- Points to commit 39192d6 with unified prefetch macros
- Replaces all Intel-specific _mm_prefetch calls with cross-platform macros
- Enables ARM64 Linux compatibility while maintaining x86 performance
- Resolves all remaining compilation errors for ARM64 builds

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Update DiskANN submodule with corrected ARM64 compatibility fixes

- Points to commit 3cb87a8 with proper x86 platform detection
- Includes ARM64 fallback for AVXDistanceInnerProductFloat function
- Resolves all remaining '__m256 was not declared' compilation errors
- Enables successful ARM64 Linux wheel builds for Docker compatibility

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Update DiskANN submodule with template type handling fix

- Points to commit d396bc3 with corrected template type handling
- Fixes DistanceInnerProduct template instantiation for int8_t/uint8_t types
- Resolves 'cannot convert const signed char* to const float*' error
- Completes ARM64 Linux compilation compatibility

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Update DiskANN submodule with DistanceFastL2::norm template fix

- Points to commit 69d9a99 with corrected template type handling
- Fixes DistanceFastL2::norm template instantiation for int8_t/uint8_t types
- Resolves another 'cannot convert const signed char* to const float*' error
- Continues ARM64 Linux compilation compatibility improvements

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Update DiskANN submodule with LAPACKE header detection

- Points to commit 64a9e01 with LAPACKE header path configuration
- Adds pkg-config based detection for LAPACKE include directories
- Resolves 'lapacke.h: No such file or directory' compilation error
- Completes OpenBLAS integration for ARM64 Linux builds

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Update DiskANN submodule with enhanced LAPACKE header detection

- Points to commit 18d0721 with fallback LAPACKE header search paths
- Checks multiple standard locations for lapacke.h on various systems
- Improves ARM64 Linux compatibility for OpenBLAS builds
- Should resolve 'lapacke.h: No such file or directory' errors

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Add liblapacke-dev package for ARM64 Linux builds

- Add liblapacke-dev to ARM64 dependencies alongside libopenblas-dev
- Provides lapacke.h header file needed for LAPACK C interface
- Fixes 'lapacke.h: No such file or directory' compilation error
- Enables complete OpenBLAS + LAPACKE support for ARM64 wheel builds

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Update DiskANN submodule with cosine_similarity.h x86 intrinsics fix

- Points to commit dbb17eb with corrected conditional compilation
- Fixes immintrin.h inclusion for ARM64 compatibility in cosine_similarity.h
- Resolves 'immintrin.h: No such file or directory' error
- Continues systematic ARM64 Linux compilation fixes

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* fix: Update DiskANN submodule with LAPACKE library linking fix

- Points to commit 19f9603 with explicit LAPACKE library discovery and linking
- Resolves 'undefined symbol: LAPACKE_sgesdd' runtime error on ARM64 Linux
- Completes ARM64 Linux wheel build compatibility for Docker deployments

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
2025-09-02 14:27:06 -07:00
Yichuan Wang
d41e467df9 [CLI] More robust leann list and leann build (#84)
* chore(submodule): bump faiss to latest storage-efficient build

* [chore] add slack to share use case

* [cli] better gitignore / better leann list

* [cli] fix # 81
2025-09-01 18:36:27 -07:00
yichuan520030910320
4ca0489cb1 [chore] add slack to share use case 2025-09-01 13:31:16 -07:00
yichuan520030910320
e83a671918 chore(submodule): bump faiss to latest storage-efficient build 2025-09-01 13:31:12 -07:00
yichuan520030910320
4e5b73ce7b fix bug introduce in #58 2025-08-22 02:35:09 -07:00
Gabriel Dehan
31b4973141 Metadata filtering feature (#75)
* Metadata filtering initial version

* Metadata filtering initial version

* Fixes linter issues

* Cleanup code

* Clean up and readme

* Fix after review

* Use UV in example

* Merge main into feature/metadata-filtering
2025-08-20 19:57:56 -07:00
Yichuan Wang
dde2221513 [EXP] Update the benchmark code (#71)
* chore(hnsw): reorder imports to satisfy ruff I001

* chore: sync changes; fix Ruff import order; update examples, benchmarks, and dependencies

- Fix import order in packages/leann-backend-hnsw/leann_backend_hnsw/hnsw_backend.py (Ruff I001)

- Update benchmarks/run_evaluation.py

- Update apps/base_rag_example.py and leann-core API usage

- Add benchmarks/data/README.md

- Update uv.lock

- Misc cleanup

- Note: added paru-bin as an embedded git repo; consider making it a submodule (git rm --cached paru-bin) if unintended

* chore: remove unintended embedded repo paru-bin and ignore it

Fix CI: avoid missing .gitmodules entry by removing gitlink and adding to .gitignore.

* ci: retrigger after removing unintended gitlink (paru-bin)

* feat(benchmarks): add --batch-size option and plumb through to HNSW search (default 0)

* feat(hnsw): add batch_size to LeannSearcher.search and LeannChat.ask; forward only for HNSW backend

* chore(logging): surface recompute and batching params; enable INFO logging in benchmark

* feat(embeddings): add optional manual tokenization path (HF tokenizer+model) with mean pooling; default remains SentenceTransformer.encode

* fix micro bench and fix pre commit

* update readme

---------

Co-authored-by: yichuan-w <yichuan-w@users.noreply.github.com>
2025-08-20 17:31:46 -07:00
Andy Lee
6d11e86e71 Run Evaluation RPJ Wiki on Arch Linux (#74)
* chore: ignore benchmark data

* perf: avoid merging offset dicts for lower mem usage

* style: format

* docs: rpj_wiki
2025-08-20 12:25:54 -07:00
Gabriel Dehan
13bb561aad Add AST-aware code chunking for better code understanding (#58)
* feat(core): Add AST-aware code chunking with astchunk integration

This PR introduces intelligent code chunking that preserves semantic boundaries
(functions, classes, methods) for better code understanding in RAG applications.

Key Features:
- AST-aware chunking for Python, Java, C#, TypeScript files
- Graceful fallback to traditional chunking for unsupported languages
- New specialized code RAG application for repositories
- Enhanced CLI with --use-ast-chunking flag
- Comprehensive test suite with integration tests

Technical Implementation:
- New chunking_utils.py module with enhanced chunking logic
- Extended base RAG framework with AST chunking arguments
- Updated document RAG with --enable-code-chunking flag
- CLI integration with proper error handling and fallback

Benefits:
- Better semantic understanding of code structure
- Improved search quality for code-related queries
- Maintains backward compatibility with existing workflows
- Supports mixed content (code + documentation) seamlessly

Dependencies:
- Added astchunk and tree-sitter parsers to pyproject.toml
- All dependencies are optional - fallback works without them

Testing:
- Comprehensive test suite in test_astchunk_integration.py
- Integration tests with document RAG
- Error handling and edge case coverage

Documentation:
- Updated README.md with AST chunking highlights
- Added ASTCHUNK_INTEGRATION.md with complete guide
- Updated features.md with new capabilities

* Refactored chunk utils

* Remove useless import

* Update README.md

* Update apps/chunking/utils.py

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* Update apps/code_rag.py

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* Fix issue

* apply suggestion from @Copilot

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* Fixes after pr review

* Fix tests not passing

* Fix linter error for documentation files

* Update .gitignore with unwanted files

---------

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Andy Lee <andylizf@outlook.com>
2025-08-19 23:35:31 -07:00
GitHub Actions
0174ba5571 chore: release v0.3.2 v0.3.2 2025-08-19 09:41:40 +00:00
Andy Lee
03af82d695 fix: leann mcp search cwd & interactive issues (#72) 2025-08-19 02:27:06 -07:00